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L3_105_000M1_scaffold_642

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_642_1
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..177
DNA (177bp) protein (59aa)
Conserved domain protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R2Q3_9CLOT
Conserved domain protein {ECO:0000313|EMBL:CDC39454.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
phage membrane protein
L3_105_000M1_scaffold_642_2
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

181..921
DNA (741bp) protein (247aa)
Cell surface protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RYI2_9CLOT
Cell surface protein {ECO:0000313|EMBL:CDC39452.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Fibronectin type III domain.
L3_105_000M1_scaffold_642_3
unknown

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992..1153
DNA (162bp) protein (54aa)

This feature has no annotations

L3_105_000M1_scaffold_642_4
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1119..1346
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R937_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC39451.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_642_5
unknown

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1361..1534
DNA (174bp) protein (58aa)

This feature has no annotations

L3_105_000M1_scaffold_642_6
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1531..2562
DNA (1032bp) protein (344aa)
Glycosyl hydrolase family 25 n=1 Tax=Clostridium sp. CAG:352 RepID=R6QWS2_9CLOT
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:CDC37414.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
FOG: Glucan-binding domain (YG repeat)
L3_105_000M1_scaffold_642_7
unknown

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2578..2829
DNA (252bp) protein (84aa)

This feature has no annotations

L3_105_000M1_scaffold_642_8
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2829..3167
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YVL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA20672.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
L3_105_000M1_scaffold_642_9
Bacillus licheniformis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3188..3355
DNA (168bp) protein (56aa)
Glycoside Hydrolase Family 25 n=2 Tax=Bacillus licheniformis RepID=Q65KM7_BACLD
phage glycoside hydrolase
Glycoside Hydrolase Family 25 {ECO:0000313|EMBL:AAU23032.1}; TaxID=279010 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC; 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46).;"
L3_105_000M1_scaffold_642_10
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3560..4117)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H1V5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE33266.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
hypothetical protein
L3_105_000M1_scaffold_642_11
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4213..4689)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H1V5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE33266.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
conserved hypothetical protein
L3_105_000M1_scaffold_642_12
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4697..4891)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UKP0_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU24236.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_105_000M1_scaffold_642_13
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5623..6180)
DNA (558bp) protein (186aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QPD8_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDC38478.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
transcription regulator phage-related
L3_105_000M1_scaffold_642_14
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6408..7418)
DNA (1011bp) protein (337aa)
Theronine dehydrogenase-like Zn-dependent dehydrogenase n=1 Tax=Clostridium sp. CAG:352 RepID=R6QRJ3_9CLOT
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:CDC38475.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
theronine dehydrogenase-like Zn-dependent dehydrogenase
L3_105_000M1_scaffold_642_15
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7437..10214)
DNA (2778bp) protein (926aa)
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase {ECO:0000256|SAAS:SAAS00056887}; EC=2.2.1.- {ECO:0000256|SAAS:SAAS00275386};; EC=2.2.1.9 {ECO:0000256|SAAS:SAAS00056850};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
2-oxoglutarate decarboxylase n=1 Tax=Clostridium sp. CAG:352 RepID=R6RVL2_9CLOT
2-oxoglutarate decarboxylase
L3_105_000M1_scaffold_642_16
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10357..10803)
DNA (447bp) protein (149aa)
ribose 5-phosphate isomerase B (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=1 Tax=Clostridium sp. CAG:352 RepID=R6QZQ9_9CLOT
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:CDC38469.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_642_17
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10835..11545)
DNA (711bp) protein (237aa)
Universal bacterial protein YeaZ n=1 Tax=Clostridium sp. CAG:352 RepID=R6R5V4_9CLOT
Universal bacterial protein YeaZ {ECO:0000313|EMBL:CDC38466.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
peptidase M22 glycoprotease
L3_105_000M1_scaffold_642_18
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11542..11964)
DNA (423bp) protein (141aa)
Conserved hypothetical nucleotide-binding protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QZQ3_9CLOT
Conserved hypothetical nucleotide-binding protein {ECO:0000313|EMBL:CDC38464.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
conserved hypothetical nucleotide-binding protein
L3_105_000M1_scaffold_642_19
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11982..13649)
DNA (1668bp) protein (556aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Clostridium sp. CAG:352 RepID=R6RVJ9_9CLOT
L3_105_000M1_scaffold_642_20
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13835..14755)
DNA (921bp) protein (307aa)
Elongation factor Ts n=1 Tax=Clostridium sp. CAG:352 RepID=R6QRH4_9CLOT
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
translation elongation factor Ts (EF-Ts)
L3_105_000M1_scaffold_642_21
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14843..15577)
DNA (735bp) protein (245aa)
30S ribosomal protein S2 n=1 Tax=Clostridium sp. CAG:352 RepID=R6QPB3_9CLOT
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
SSU ribosomal protein S2P
L3_105_000M1_scaffold_642_22
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15756..16037)
DNA (282bp) protein (94aa)
Sporulation protein YlmC/YmxH family n=1 Tax=Clostridium sp. CAG:352 RepID=R6R5T8_9CLOT
Sporulation protein YlmC/YmxH family {ECO:0000313|EMBL:CDC38456.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
sporulation protein, YlmC/YmxH family
L3_105_000M1_scaffold_642_23
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16295..16948)
DNA (654bp) protein (218aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Clostridium sp. CAG:352 RepID=R6QZP1_9CLOT
L3_105_000M1_scaffold_642_24
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16974..21869)
DNA (4896bp) protein (1632aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QPA8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38453.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L3_105_000M1_scaffold_642_25
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21882..22649)
DNA (768bp) protein (256aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
RNA methyltransferase TrmH family group 3 n=1 Tax=Clostridium sp. CAG:352 RepID=R6R5S9_9CLOT
RNA methyltransferase TrmH family group 3 {ECO:0000313|EMBL:CDC38451.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_642_26
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23119..24312)
DNA (1194bp) protein (398aa)
Metallo-beta-lactamase domain protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RVI7_9CLOT
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CDC38447.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
beta-lactamase domain protein
L3_105_000M1_scaffold_642_27
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24317..25906)
DNA (1590bp) protein (530aa)
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II n=1 Tax=Clostridium sp. CAG:352 RepID=R6R5S4_9CLOT
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II {ECO:0000313|EMBL:CDC38446.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Phosphomannomutase
L3_105_000M1_scaffold_642_28
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25869..26837)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QZN2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38444.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_642_29
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27028..27504
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RVI1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38442.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_642_30
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27557..28975)
DNA (1419bp) protein (473aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Clostridium sp. CAG:352 RepID=R6QRF0_9CLOT
Displaying items 1-30 of 88 in total

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