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L3_105_000M1_scaffold_358

Search features with annotation key words

Displaying items 1-30 of 169 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_358_1
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(219..755)
DNA (537bp) protein (179aa)
30S ribosomal protein S9 n=1 Tax=Paenibacillus sp. JC66 RepID=UPI00028A2820
30S ribosomal protein S9
Tax=BJP_IG2157_Clostridiales_52_13
L3_105_000M1_scaffold_358_2
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(775..1206)
DNA (432bp) protein (144aa)
50S ribosomal protein L13 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9Q2_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rplM; 50S ribosomal protein L13
L3_105_000M1_scaffold_358_3
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1408..1869)
DNA (462bp) protein (154aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDU9_9CLOT
RNA methyltransferase
L3_105_000M1_scaffold_358_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1931..4336)
DNA (2406bp) protein (802aa)
Nucleotidyl transferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B217_9CLOT
Nucleotidyl transferase {ECO:0000313|EMBL:CCX49590.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
nucleotidyl transferase
L3_105_000M1_scaffold_358_5
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4420..5487)
DNA (1068bp) protein (356aa)
Possible RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5Y1_9CLOT
Possible RNA polymerase sigma factor {ECO:0000313|EMBL:CCX49589.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_105_000M1_scaffold_358_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5484..6875)
DNA (1392bp) protein (464aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2V0_9CLOT
ATP-dependent protease ATPase subunit HslU {ECO:0000313|EMBL:CCX49588.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hslU; ATP-dependent protease ATPase subunit HslU
L3_105_000M1_scaffold_358_7
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6875..7411)
DNA (537bp) protein (179aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ATP-dependent protease subunit HslV n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9P8_9CLOT
ATP dependent peptidase subunit CodW
L3_105_000M1_scaffold_358_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7525..8868)
DNA (1344bp) protein (448aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
trmFO; Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO (EC:2.1.1.74)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDU6_9CLOT
L3_105_000M1_scaffold_358_9
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8855..10963)
DNA (2109bp) protein (703aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AKI0_9CLOT
L3_105_000M1_scaffold_358_10
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11003..12115)
DNA (1113bp) protein (371aa)
DNA protecting protein DprA n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5X6_9CLOT
DNA protecting protein DprA {ECO:0000313|EMBL:CCX49584.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
DNA protecting protein DprA
L3_105_000M1_scaffold_358_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12112..13647)
DNA (1536bp) protein (512aa)
Mg chelatase subunit ChlI n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2U6_9CLOT
Mg chelatase subunit ChlI {ECO:0000313|EMBL:CCX49583.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Mg chelatase subunit ChlI
L3_105_000M1_scaffold_358_12
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13679..14158)
DNA (480bp) protein (160aa)
GtrA family protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9P5_9CLOT
GtrA family protein {ECO:0000313|EMBL:CCX49582.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
GtrA family protein
L3_105_000M1_scaffold_358_13
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14182..17916)
DNA (3735bp) protein (1245aa)
Glycosyl transferase family 39 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDU3_9CLOT
Glycosyl transferase family 39 {ECO:0000313|EMBL:CCX49581.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
glycosyl transferase family protein
L3_105_000M1_scaffold_358_14
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18028..18381)
DNA (354bp) protein (118aa)
UPF0102 protein BN545_01020 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B209_9CLOT
UPF0102 protein BN545_01020 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_105_000M1_scaffold_358_15
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18378..19013)
DNA (636bp) protein (212aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Ribonuclease HII n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5X1_9CLOT
rnhB; ribonuclease HII
L3_105_000M1_scaffold_358_16
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19037..19888)
DNA (852bp) protein (284aa)
Ribosome biogenesis GTPase A n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2U2_9CLOT
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ribosome biogenesis GTP-binding protein YlqF
L3_105_000M1_scaffold_358_17
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19965..20318)
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9P2_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
50S ribosomal protein L19
L3_105_000M1_scaffold_358_18
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20438..21172)
DNA (735bp) protein (245aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDU1_9CLOT
trmD; tRNA (guanine-N(1)-)-methyltransferase
L3_105_000M1_scaffold_358_19
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21162..21689)
DNA (528bp) protein (176aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium sp. CAG:226 RepID=R5B206_9CLOT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rimM; 16S rRNA-processing protein RimM
L3_105_000M1_scaffold_358_20
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21691..21918)
DNA (228bp) protein (76aa)
UPF0109 protein BN545_01014 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5W8_9CLOT
UPF0109 protein BN545_01014 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein UPF0109
L3_105_000M1_scaffold_358_21
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21945..22187)
DNA (243bp) protein (81aa)
30S ribosomal protein S16 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2U0_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
30S ribosomal protein S16
L3_105_000M1_scaffold_358_22
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22262..23605)
DNA (1344bp) protein (448aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9N9_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
signal recognition particle subunit FFH/SRP54 (srp54)
L3_105_000M1_scaffold_358_23
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23595..23927)
DNA (333bp) protein (111aa)
UPF0122 protein BN545_01011 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDT9_9CLOT
UPF0122 protein BN545_01011 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_105_000M1_scaffold_358_24
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24036..24506)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B203_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49570.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_105_000M1_scaffold_358_25
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24508..25413)
DNA (906bp) protein (302aa)
Signal recognition particle receptor FtsY n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5W3_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
signal recognition particle-docking protein FtsY
L3_105_000M1_scaffold_358_26
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25423..28980)
DNA (3558bp) protein (1186aa)
Chromosome partition protein Smc n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2T6_9CLOT
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
smc; chromosome segregation protein Smc
L3_105_000M1_scaffold_358_27
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28977..29705)
DNA (729bp) protein (243aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
RNAse III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9N4_9CLOT
L3_105_000M1_scaffold_358_28
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29775..29999)
DNA (225bp) protein (75aa)
Acyl carrier protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDT6_9CLOT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
acyl carrier protein
L3_105_000M1_scaffold_358_29
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30101..31108)
DNA (1008bp) protein (336aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Phosphate acyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B200_9CLOT
fatty acid/phospholipid synthesis protein PlsX
L3_105_000M1_scaffold_358_30
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(31225..31413)
DNA (189bp) protein (63aa)
50S ribosomal protein L32 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5V8_9CLOT
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
50S ribosomal protein L32
Displaying items 1-30 of 169 in total

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