ggKbase home page

L3_105_000M1_scaffold_888

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_888_1
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

427..924
DNA (498bp) protein (166aa)
Translation initiation factor IF-3 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7L1_9CLOT
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
infC; translation initiation factor IF-3
L3_105_000M1_scaffold_888_2
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


952..1149
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3U0_9CLOT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
50S ribosomal protein L35
L3_105_000M1_scaffold_888_3
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1165..1521
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BFM2_9CLOT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rplT; 50S ribosomal protein L20
L3_105_000M1_scaffold_888_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1625..1999)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BBM1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50247.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_105_000M1_scaffold_888_5
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2100..2642)
DNA (543bp) protein (181aa)
Ribosomal subunit interface protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4M5_9CLOT
Ribosomal subunit interface protein {ECO:0000313|EMBL:CCX50248.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
sigma 54 modulation protein / 30S ribosomal protein S30P
L3_105_000M1_scaffold_888_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2737..5424)
DNA (2688bp) protein (896aa)
Ferrous iron transport protein B n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7L6_9CLOT
Ferrous iron transport protein B {ECO:0000313|EMBL:CCX50249.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ferrous iron transporter FeoB
L3_105_000M1_scaffold_888_7
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5555..6391
DNA (837bp) protein (279aa)
Epimerase PhzC/PhzF-like protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3U6_9CLOT
Epimerase PhzC/PhzF-like protein {ECO:0000313|EMBL:CCX50250.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
phenazine biosynthesis protein phzF
L3_105_000M1_scaffold_888_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6466..6747
DNA (282bp) protein (94aa)
Stress responsive alpha-beta barrel domain-containing protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BFM8_9CLOT
Stress responsive alpha-beta barrel domain-containing protein {ECO:0000313|EMBL:CCX50251.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
stress responsive alpha-beta barrel domain-containing protein
L3_105_000M1_scaffold_888_9
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6749..8785
DNA (2037bp) protein (679aa)
UvrABC system protein B n=1 Tax=Clostridium sp. CAG:226 RepID=R5BBM7_9CLOT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
excinuclease ABC subunit B
L3_105_000M1_scaffold_888_10
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8830..11664
DNA (2835bp) protein (945aa)
UvrABC system protein A n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4M8_9CLOT
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
excinuclease ABC subunit A
L3_105_000M1_scaffold_888_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11698..12426
DNA (729bp) protein (243aa)
Nitroreductase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7M1_9CLOT
Nitroreductase {ECO:0000313|EMBL:CCX50254.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
nitroreductase
L3_105_000M1_scaffold_888_12
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12542..13171
DNA (630bp) protein (210aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3V2_9CLOT
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
CoA-binding domain-containing protein
L3_105_000M1_scaffold_888_13
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13208..13753
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BFN3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50256.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Rubrerythrin
L3_105_000M1_scaffold_888_14
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(13832..15952)
DNA (2121bp) protein (707aa)
bwe:BcerKBAB4_1701 beta-lactamase inhibitory protein II id=1241528 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
chromosome condensation regulator RCC1
Tax=RBG_13_Chloroflexi_51_36_curated
L3_105_000M1_scaffold_888_15
unknown

Not on your lists

comp(15968..16228)
DNA (261bp) protein (87aa)

This feature has no annotations

L3_105_000M1_scaffold_888_16
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16522..17718)
DNA (1197bp) protein (399aa)
type III restriction-modification system, Mod subunit (EC:2.1.1.72)
DNA methylase N-4/N-6 domain protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BCU6_9CLOT
DNA methylase N-4/N-6 domain protein {ECO:0000313|EMBL:CCX49251.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_105_000M1_scaffold_888_17
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17796..18464)
DNA (669bp) protein (223aa)
Transcriptional regulator GntR family n=1 Tax=Clostridium sp. CAG:226 RepID=R5B8R0_9CLOT
Transcriptional regulator GntR family {ECO:0000313|EMBL:CCX49252.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
transcriptional regulator
L3_105_000M1_scaffold_888_18
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18622..19989
DNA (1368bp) protein (456aa)
VanW family protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B1V0_9CLOT
VanW family protein {ECO:0000313|EMBL:CCX49253.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
von Willebrand factor A
L3_105_000M1_scaffold_888_19
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20241..21254
DNA (1014bp) protein (338aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ABC transporter related protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4X2_9CLOT
ABC transporter ATPase subunit
L3_105_000M1_scaffold_888_20
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21247..21909
DNA (663bp) protein (221aa)
D-methionine ABC transporter permease protein MetI {ECO:0000313|EMBL:AGC67078.1}; EC=3.6.3.- {ECO:0000313|EMBL:AGC67078.1};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
methionine ABC transporter permease n=1 Tax=Lachnobacterium bovis RepID=UPI0003B522FD
ABC transporter permease subunit
L3_105_000M1_scaffold_888_21
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21973..22788
DNA (816bp) protein (272aa)
metQ; D-methionine ABC transporter substrate binding protein MetI (EC:3.6.3.-)
Lipoprotein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B135_9CLOT
Lipoprotein {ECO:0000313|EMBL:CCX49255.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_105_000M1_scaffold_888_22
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22979..23833
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B6U8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50988.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_105_000M1_scaffold_888_23
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23983..24990
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9N8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50989.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_105_000M1_scaffold_888_24
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24990..26276
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5Z9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50990.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_105_000M1_scaffold_888_25
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26424..27356
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BHU6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50991.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_105_000M1_scaffold_888_26
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27393..29204
DNA (1812bp) protein (604aa)
Pyrrolo-quinoline quinone n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDS9_9CLOT
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:CCX50992.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_105_000M1_scaffold_888_27
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29381..30082
DNA (702bp) protein (234aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B6V5_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCX50993.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_105_000M1_scaffold_888_28
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30093..32600
DNA (2508bp) protein (836aa)
Efflux ABC transporter permease protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9P3_9CLOT
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CCX50994.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_105_000M1_scaffold_888_29
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32612..34498
DNA (1887bp) protein (629aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B604_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50995.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
X-X-X-Leu-X-X-Gly heptad repeats
L3_105_000M1_scaffold_888_30
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34495..35439)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BHW8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50996.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
Displaying items 1-30 of 82 in total

View Taxonomy