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L3_105_000M1_scaffold_2821

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_2821_1
unknown

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comp(1..102)
DNA (102bp) protein (34aa)

This feature has no annotations

L3_105_000M1_scaffold_2821_2
Peptococcaceae bacterium BRH_c4b, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(799..2556)
DNA (1758bp) protein (586aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452, ECO:0000256|SAAS:SAAS00222031}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=1629717 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4b.;"
phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZWB3_MAHA5
L3_105_000M1_scaffold_2821_3
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2658..3539)
DNA (882bp) protein (294aa)
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LST9_CLOCD
L3_105_000M1_scaffold_2821_4
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3541..4755)
DNA (1215bp) protein (405aa)
3D domain protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MK58_ALKOO
3D domain-containing protein
3D domain protein {ECO:0000313|EMBL:ABW20190.1}; Flags: Precursor;; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
L3_105_000M1_scaffold_2821_5
GWC2_Clostridiales_40_7_curated, Clostridiales, Bacteria

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comp(4798..5595)
DNA (798bp) protein (266aa)
Hydrolase, TatD family id=4666580 bin=GWC2_Clostridiales_40_7 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
TatD family hydrolase
Tax=GWC2_Clostridiales_40_7_curated
L3_105_000M1_scaffold_2821_6
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5597..6424)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PWS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ20663.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
hypothetical protein
L3_105_000M1_scaffold_2821_7
Haloplasma contractile, Haloplasma, Haloplasmatales, Bacteria

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comp(6440..7231)
DNA (792bp) protein (264aa)
Oleoyl-acyl-carrier-protein hydrolase {ECO:0000313|EMBL:ERJ11968.1}; EC=3.1.2.14 {ECO:0000313|EMBL:ERJ11968.1};; TaxID=1033810 species="Bacteria; Haloplasmatales; Haloplasmataceae; Haloplasma.;" source="Haloplasma contractile SSD-17B.;"
acyl-ACP thioesterase n=1 Tax=Ornithinibacillus scapharcae RepID=UPI000225AA67
putative acyl-ACP thioesterase superfamily protein
L3_105_000M1_scaffold_2821_8
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7277..8986)
DNA (1710bp) protein (570aa)
AMP-dependent synthetase and ligase n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I367_CLOCE
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACL76210.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L3_105_000M1_scaffold_2821_9
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9422..10147)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5UZ72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ83623.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
lipoprotein
L3_105_000M1_scaffold_2821_10
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10326..12701
DNA (2376bp) protein (792aa)
Penicillin-binding protein, 1A family n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M1N7_CLOCD
penicillin-binding protein
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:AEV70266.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_105_000M1_scaffold_2821_11
unknown

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12724..13500
DNA (777bp) protein (259aa)

This feature has no annotations

Displaying 11 items

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