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L3_105_000M1_scaffold_1019

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1019_1
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(928..1878)
DNA (951bp) protein (317aa)
Oxidoreductase domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AEX3_9CLOT
Oxidoreductase domain protein {ECO:0000313|EMBL:CCX37911.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
oxidoreductase domain-containing protein
L3_105_000M1_scaffold_1019_2
Paenibacillus barengoltzii, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1919..2380)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Paenibacillus barengoltzii G22 RepID=R9L9W1_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EOS55569.1}; TaxID=1235795 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus barengoltzii G22.;"
hypothetical protein
L3_105_000M1_scaffold_1019_3
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2377..4161)
DNA (1785bp) protein (595aa)
Glycoside hydrolase family 95 Gh95A n=1 Tax=Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) RepID=E0S367_BUTPB
gh95A; glycoside hydrolase family 95 Gh95A
Glycoside hydrolase family 95 Gh95A {ECO:0000313|EMBL:ADL35849.1}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
L3_105_000M1_scaffold_1019_4
unknown

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comp(4460..5020)
DNA (561bp) protein (187aa)

This feature has no annotations

L3_105_000M1_scaffold_1019_5
unknown

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comp(5054..5767)
DNA (714bp) protein (238aa)

This feature has no annotations

L3_105_000M1_scaffold_1019_6
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6599..7522)
DNA (924bp) protein (308aa)
Band7 family protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZD7_CLOA9
hypothetical protein
Band7 family protein {ECO:0000313|EMBL:AFS77736.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
L3_105_000M1_scaffold_1019_7
Prevotella pallens, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7555..7995)
DNA (441bp) protein (147aa)
Membrane protein implicated in regulation of membrane protease activity n=1 Tax=Prevotella pallens ATCC 700821 RepID=F9DGZ3_9BACT
Membrane protein implicated in regulation of membrane protease activity {ECO:0000313|EMBL:EGQ19651.1}; TaxID=997353 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella pallens ATCC 700821.;"
nfeD; nodulation efficiency protein D
L3_105_000M1_scaffold_1019_8
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8059..9246)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6T1Q0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC61656.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
hypothetical protein
L3_105_000M1_scaffold_1019_9
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9388..11277
DNA (1890bp) protein (630aa)
UvrABC system protein C n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUN5_CLOCD
Excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_105_000M1_scaffold_1019_10
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11277..12038
DNA (762bp) protein (254aa)
Metallophosphoesterase n=1 Tax=Clostridium sp. CAG:440 RepID=R7GEI1_9CLOT
Metallophosphoesterase {ECO:0000313|EMBL:CDE25213.1}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
putative phosphoesterase
L3_105_000M1_scaffold_1019_11
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

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comp(12022..12984)
DNA (963bp) protein (321aa)
diacylglycerol kinase (EC:2.7.1.107)
Diacylglycerol kinase catalytic domain-containing protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7BWH5_9FIRM
Diacylglycerol kinase catalytic domain-containing protein {ECO:0000313|EMBL:CDD70191.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
L3_105_000M1_scaffold_1019_12
unknown

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comp(12999..14651)
DNA (1653bp) protein (551aa)

This feature has no annotations

L3_105_000M1_scaffold_1019_13
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14688..16400)
DNA (1713bp) protein (571aa)
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes (EC:2.7.8.-)
phospholipase n=1 Tax=Clostridium arbusti RepID=UPI000287FA72
Uncharacterized protein {ECO:0000313|EMBL:CCX57706.1}; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
L3_105_000M1_scaffold_1019_14
Selenomonas flueggei, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(16480..17382)
DNA (903bp) protein (301aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=638302 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas flueggei ATCC 43531.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V0I3_9FIRM
L3_105_000M1_scaffold_1019_15
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17379..17843)
DNA (465bp) protein (155aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ91_9CLOT
hypothetical protein
L3_105_000M1_scaffold_1019_16
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17840..18628)
DNA (789bp) protein (263aa)
Metal-dependent hydrolase, beta-lactamase superfamily I n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUF1_CLOCD
metal-dependent hydrolase, beta-lactamase superfamily I
Metal-dependent hydrolase, beta-lactamase superfamily I {ECO:0000313|EMBL:AEV70599.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_105_000M1_scaffold_1019_17
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18631..19908)
DNA (1278bp) protein (426aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=2 Tax=Clostridium thermocellum RepID=A3DHV1_CLOTH
L3_105_000M1_scaffold_1019_18
unknown

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comp(20084..20551)
DNA (468bp) protein (156aa)

This feature has no annotations

L3_105_000M1_scaffold_1019_19
unknown

Not on your lists

comp(20603..20884)
DNA (282bp) protein (94aa)

This feature has no annotations

L3_105_000M1_scaffold_1019_20
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21110..21787)
DNA (678bp) protein (226aa)
Predicted protein n=1 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) RepID=A5E489_LODEL
Uncharacterized protein {ECO:0000313|EMBL:KJC62963.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
hypothetical protein
L3_105_000M1_scaffold_1019_21
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21936..23531)
DNA (1596bp) protein (532aa)
Peptide chain release factor 3 n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZQ3_CLOCD
peptide chain release factor 3 (bRF-3)
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_105_000M1_scaffold_1019_22
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(23570..25225)
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=Lactococcus garvieae RepID=UPI0002FF0E47
hypothetical protein
Tax=RBG_13_Planctomycetes_50_24_curated
L3_105_000M1_scaffold_1019_23
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25510..25872
DNA (363bp) protein (121aa)
Transcriptional regulator, Spx/MgsR family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NVH1_9FIRM
Transcriptional regulator, Spx/MgsR family {ECO:0000313|EMBL:EDM99940.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_105_000M1_scaffold_1019_24
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25924..26757
DNA (834bp) protein (278aa)
Radical SAM domain protein n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SWD5_SYNGF
radical SAM protein
Radical SAM domain protein {ECO:0000313|EMBL:ADY55701.1}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
L3_105_000M1_scaffold_1019_25
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26754..28202)
DNA (1449bp) protein (483aa)
nahA1; beta-N-acetylhexosaminidase (EC:3.2.1.52)
Beta-N-acetylhexosaminidase family GH20 n=1 Tax=Clostridium sp. CAG:448 RepID=R6T692_9CLOT
Beta-N-acetylhexosaminidase family GH20 {ECO:0000313|EMBL:CDC63326.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
L3_105_000M1_scaffold_1019_26
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28309..30132)
DNA (1824bp) protein (608aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CEP8_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI67717.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ABC transporter
L3_105_000M1_scaffold_1019_27
Sporolactobacillus laevolacticus, Sporolactobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30125..31954)
DNA (1830bp) protein (610aa)
ABC transporter permease n=1 Tax=Sporolactobacillus laevolacticus DSM 442 RepID=V6J2V0_9BACL
ABC transporter permease {ECO:0000313|EMBL:EST13526.1}; TaxID=1395513 species="Bacteria; Firmicutes; Bacilli; Bacillales; Sporolactobacillaceae; Sporolactobacillus.;" source="Sporolactobacillus laevolacticus DSM 442.;"
ABC transporter
L3_105_000M1_scaffold_1019_28
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31979..33526)
DNA (1548bp) protein (516aa)
Peptidase S8/S53 family n=1 Tax=Eubacterium sp. CAG:161 RepID=R5L8Q0_9FIRM
Peptidase S8/S53 family {ECO:0000313|EMBL:CCY69666.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
hypothetical protein
Displaying 28 items

View Taxonomy