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L3_105_000M1_scaffold_267

Search features with annotation key words

Displaying items 1-30 of 123 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_267_1
unknown

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comp(2..205)
DNA (204bp) protein (68aa)

This feature has no annotations

L3_105_000M1_scaffold_267_2
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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510..683
DNA (174bp) protein (58aa)
30S ribosomal protein S21 n=5 Tax=Clostridium RepID=RS21_CLOCE
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
L3_105_000M1_scaffold_267_3
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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860..2092
DNA (1233bp) protein (411aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WHP4_9FIRM
L3_105_000M1_scaffold_267_4
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2101..3492
DNA (1392bp) protein (464aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
Argininosuccinate lyase n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DQA3_9FIRM
argininosuccinate lyase
L3_105_000M1_scaffold_267_5
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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3473..4414
DNA (942bp) protein (314aa)
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IE41_9FIRM
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000313|EMBL:CCY40350.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L3_105_000M1_scaffold_267_6
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4414..5640
DNA (1227bp) protein (409aa)
argJ; Arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.35)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6EGG4_9FIRM
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
L3_105_000M1_scaffold_267_7
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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5652..6509
DNA (858bp) protein (286aa)
N-acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase id=4390514 bin=GWF2_Clostridiales_38_85 species=Clostridium sp. MSTE9 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
Tax=GWF2_Clostridiales_38_85_curated
L3_105_000M1_scaffold_267_8
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6533..7699
DNA (1167bp) protein (389aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
Acetylornithine aminotransferase n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DNG2_9FIRM
succinylornithine transaminase
L3_105_000M1_scaffold_267_9
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7696..8601
DNA (906bp) protein (302aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Clostridium sp. CAG:678 RepID=R5KLZ6_9CLOT
L3_105_000M1_scaffold_267_10
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8598..9149
DNA (552bp) protein (184aa)
Phage SPO1 DNA polymerase-related protein n=7 Tax=Clostridium thermocellum RepID=A3DK24_CLOTH
phage SPO1 DNA polymerase-like protein
Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:ABN54303.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_105_000M1_scaffold_267_11
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9136..9768
DNA (633bp) protein (211aa)
Uracil-DNA glycosylase superfamily n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TGK9_9CLOT
Uracil-DNA glycosylase superfamily {ECO:0000313|EMBL:EGD46574.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
uracil-DNA glycosylase, family 4
L3_105_000M1_scaffold_267_12
GWE2_Clostridiales_32_10_curated, Clostridiales, Bacteria

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9803..10705
DNA (903bp) protein (301aa)
Serine-type D-Ala-D-Ala carboxypeptidase id=2185351 bin=GWE2_Clostridiales_32_10 species=Clostridium sp. ASF356 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
D-alanyl-D-alanine carboxypeptidase
Tax=GWE2_Clostridiales_32_10_curated
L3_105_000M1_scaffold_267_13
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11111..12373
DNA (1263bp) protein (421aa)
Theronine dehydrogenase-like Zn-dependent dehydrogenase n=1 Tax=Eubacterium sp. CAG:841 RepID=R7G1L3_9FIRM
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:CDE19872.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
alcohol dehydrogenase, zinc-binding domain protein
L3_105_000M1_scaffold_267_14
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12410..13903
DNA (1494bp) protein (498aa)
xylulokinase (EC:2.7.1.5)
Rhamnulokinase RhaB {ECO:0000313|EMBL:AGC67867.1}; EC=2.7.1.5 {ECO:0000313|EMBL:AGC67867.1};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
Rhamnulokinase RhaB n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VM94_CLOSH
L3_105_000M1_scaffold_267_15
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13900..14541
DNA (642bp) protein (214aa)
Phosphoheptose isomerase (EC:5.-.-.-)
Phosphoheptose isomerase n=1 Tax=Clostridium sp. CAG:81 RepID=R5G2M0_9CLOT
Phosphoheptose isomerase {ECO:0000313|EMBL:KEZ91569.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
L3_105_000M1_scaffold_267_16
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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14541..15641
DNA (1101bp) protein (367aa)
Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNZ2_9FIRM
Ribonuclease, Rne/Rng family {ECO:0000313|EMBL:EAX48100.1}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
ribonuclease
L3_105_000M1_scaffold_267_17
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15724..16617
DNA (894bp) protein (298aa)
Metal-dependent hydrolase n=1 Tax=Clostridium sp. CAG:448 RepID=R6TRV6_9CLOT
Metal-dependent hydrolase {ECO:0000313|EMBL:CDC61377.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
hypothetical protein
L3_105_000M1_scaffold_267_18
Enterococcus avium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(16713..17114)
DNA (402bp) protein (134aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EK71_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EOT42156.1}; TaxID=1140002 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus avium ATCC 14025.;"
bacitracin ABC transporter ATP-binding protein
L3_105_000M1_scaffold_267_19
unknown

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17353..18615
DNA (1263bp) protein (421aa)

This feature has no annotations

L3_105_000M1_scaffold_267_20
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18625..19479)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CSF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA78550.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L3_105_000M1_scaffold_267_21
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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19764..20873
DNA (1110bp) protein (370aa)
glutamate synthase (NADPH) GltB1 subunit (EC:1.4.1.13)
Class II glutamine amidotransferase n=1 Tax=Clostridium leptum CAG:27 RepID=R6NCS0_9CLOT
Tax=BJP_IG2069_Clostridiales_48_15
L3_105_000M1_scaffold_267_22
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20864..22369
DNA (1506bp) protein (502aa)
glutamate synthase (NADPH) GltB2 subunit (EC:1.4.1.14 1.4.1.13)
4Fe-4S binding domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAG9_9CLOT
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEG31514.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L3_105_000M1_scaffold_267_23
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22380..22808
DNA (429bp) protein (143aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MW95_9CLOT
4Fe-4S binding domain protein {ECO:0000313|EMBL:CDC03993.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
iron-sulfur cluster-binding protein
L3_105_000M1_scaffold_267_24
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22815..24074
DNA (1260bp) protein (420aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=7 Tax=Clostridium thermocellum RepID=A3DBW2_CLOTH
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ABN51441.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_105_000M1_scaffold_267_25
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24071..24802
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG31511.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
glutamate synthase subunit alpha domain-containing protein
L3_105_000M1_scaffold_267_26
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24838..26055
DNA (1218bp) protein (406aa)
Glutamine synthetase catalytic region n=1 Tax=Clostridium sp. CAG:413 RepID=R6NW48_9CLOT
Glutamine synthetase catalytic region {ECO:0000313|EMBL:CDC12619.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
glutamine synthetase catalytic subunit
L3_105_000M1_scaffold_267_27
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26072..26668
DNA (597bp) protein (199aa)
Response regulator receiver and ANTAR domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NN12_9CLOT
Response regulator receiver and ANTAR domain protein {ECO:0000313|EMBL:CDC12620.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
response regulator receiver and ANTAR domain-containing protein
L3_105_000M1_scaffold_267_28
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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26675..28288
DNA (1614bp) protein (538aa)
CTP synthase (EC:6.3.4.2)
CTP synthase id=3445674 bin=GWF2_Clostridiales_36_10 species=Clostridium nexile genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
Tax=GWF2_Clostridiales_36_10_curated
L3_105_000M1_scaffold_267_29
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(28277..29365)
DNA (1089bp) protein (363aa)
mro; aldose 1-epimerase Mro (EC:5.1.3.3)
aldose 1-epimerase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D0FB
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
L3_105_000M1_scaffold_267_30
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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comp(29400..29810)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TUL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC77143.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
Displaying items 1-30 of 123 in total

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