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L3_105_000M1_scaffold_296

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_296_1
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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39..782
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WB75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD01436.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_105_000M1_scaffold_296_2
unknown

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931..2043
DNA (1113bp) protein (371aa)

This feature has no annotations

L3_105_000M1_scaffold_296_3
unknown

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comp(2091..2666)
DNA (576bp) protein (192aa)

This feature has no annotations

L3_105_000M1_scaffold_296_4
unknown

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2862..3338
DNA (477bp) protein (159aa)

This feature has no annotations

L3_105_000M1_scaffold_296_5
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3613..4311
DNA (699bp) protein (233aa)
PhoP family transcriptional regulator n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2F630
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABN52520.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_105_000M1_scaffold_296_6
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4336..5958
DNA (1623bp) protein (541aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
signal transduction histidine kinase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2F62F
periplasmic sensor signal transduction histidine kinase
L3_105_000M1_scaffold_296_7
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5965..7527
DNA (1563bp) protein (521aa)
Trypsin-like peptidase domain protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FNJ9_9CLOT
Trypsin-like peptidase domain protein {ECO:0000313|EMBL:EMS73457.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
peptidase S1 and S6 chymotrypsin/Hap
L3_105_000M1_scaffold_296_8
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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7508..8203
DNA (696bp) protein (232aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (EC:3.2.2.- 4.2.99.18)
Endonuclease III n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y9I3_9FIRM
L3_105_000M1_scaffold_296_9
unknown

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comp(8174..8746)
DNA (573bp) protein (191aa)

This feature has no annotations

L3_105_000M1_scaffold_296_10
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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8878..9918
DNA (1041bp) protein (347aa)
HflK protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GYK4_9FIRM
HflK protein {ECO:0000313|EMBL:CDB29570.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
HflK protein
L3_105_000M1_scaffold_296_11
unknown

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9924..10082
DNA (159bp) protein (53aa)

This feature has no annotations

L3_105_000M1_scaffold_296_12
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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10182..10805
DNA (624bp) protein (208aa)
Protein HflC n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EJI9_9FIRM
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
HflC protein
L3_105_000M1_scaffold_296_13
unknown

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11072..12373
DNA (1302bp) protein (434aa)

This feature has no annotations

L3_105_000M1_scaffold_296_14
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12381..13526)
DNA (1146bp) protein (382aa)
Spore germination protein n=1 Tax=Clostridium papyrosolvens C7 RepID=U4QZP2_9CLOT
spore germination protein
Tax=BJP_IG2069_Clostridiales_48_15
L3_105_000M1_scaffold_296_15
unknown

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comp(13538..13756)
DNA (219bp) protein (73aa)

This feature has no annotations

L3_105_000M1_scaffold_296_16
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13770..14939)
DNA (1170bp) protein (390aa)
Germination protein, Ger(X)C family n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I8X5_CLOCE
Ger(x)C family germination protein
Tax=BJP_IG2069_Clostridiales_48_15
L3_105_000M1_scaffold_296_17
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14936..16474)
DNA (1539bp) protein (513aa)
Putative membrane protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N3R0_9CLOT
Putative membrane protein {ECO:0000313|EMBL:EJF39032.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
gerKA1; spore germination protein KA
L3_105_000M1_scaffold_296_18
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16876..18957)
DNA (2082bp) protein (694aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ENI6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE04006.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L3_105_000M1_scaffold_296_19
unknown

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comp(19035..19793)
DNA (759bp) protein (253aa)

This feature has no annotations

L3_105_000M1_scaffold_296_20
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20511..21098
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GJB5_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA95104.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Protein of unknown function (DUF1393).
L3_105_000M1_scaffold_296_21
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

21088..22374
DNA (1287bp) protein (429aa)
folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
FolC bifunctional protein id=2987539 bin=GWF2_Clostridiales_38_85 species=Clostridium saccharolyticum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
Tax=GWF2_Clostridiales_38_85_curated
L3_105_000M1_scaffold_296_22
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22387..23163)
DNA (777bp) protein (259aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Acetyl-CoA carboxylase carboxyl transferase alpha subunit n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AAN6_9CLOT
acetyl-CoA carboxylase, carboxyl transferase subunit alpha
L3_105_000M1_scaffold_296_23
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23179..24078)
DNA (900bp) protein (300aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVW1_9CLOT
acetyl-CoA carboxylase, carboxyl transferase subunit beta
L3_105_000M1_scaffold_296_24
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24075..25400)
DNA (1326bp) protein (442aa)
Biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase subunit alpha n=1 Tax=Clostridium sp. CAG:242 RepID=R6D4C1_9CLOT
Biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000313|EMBL:CDA78986.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
acetyl-CoA carboxylase, biotin carboxylase
L3_105_000M1_scaffold_296_25
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25434..25802)
DNA (369bp) protein (123aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC:4.2.1.-)
FabA-like domain protein n=2 Tax=Clostridium RepID=A7VVV8_9CLOT
FabA-like domain protein {ECO:0000313|EMBL:EDO61108.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
L3_105_000M1_scaffold_296_26
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25872..26312)
DNA (441bp) protein (147aa)
AccB acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LG80_THEPS
accB acetyl-CoA carboxylase, biotin carboxyl carrier protein
AccB acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:AFV11843.1}; TaxID=1089553 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
L3_105_000M1_scaffold_296_27
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26331..27587)
DNA (1257bp) protein (419aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Clostridium leptum CAG:27 RepID=R6NC45_9CLOT
L3_105_000M1_scaffold_296_28
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27624..28379)
DNA (756bp) protein (252aa)
fabG2; 3-oxoacyl-[acyl-carrier-protein] reductase FabG (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Clostridium sp. CAG:352 RepID=R6R1P8_9CLOT
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:CDC37006.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_296_29
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28379..29293)
DNA (915bp) protein (305aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A9K3_9CLOT
L3_105_000M1_scaffold_296_30
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29309..30259)
DNA (951bp) protein (317aa)
fabI; enoyl-[acyl-carrier protein] reductase FabI (EC:1.3.1.9)
Putative enoyl-(Acyl-carrier-protein) reductase II n=1 Tax=Clostridium sp. CAG:242 RepID=R6CTP2_9CLOT
Putative enoyl-(Acyl-carrier-protein) reductase II {ECO:0000313|EMBL:CDA78980.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
Displaying items 1-30 of 81 in total

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