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L3_105_000M1_scaffold_407

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_407_1
unknown

Not on your lists

2..112
DNA (111bp) protein (37aa)

This feature has no annotations

L3_105_000M1_scaffold_407_2
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(144..3932)
DNA (3789bp) protein (1263aa)
Beta-galactosidase {ECO:0000313|EMBL:CDM04209.1}; EC=3.2.1.23 {ECO:0000313|EMBL:CDM04209.1};; TaxID=702447 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens SD CC 1b.;"
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.25)
hypothetical protein n=1 Tax=Paenibacillus sp. A9 RepID=UPI000372E52B
L3_105_000M1_scaffold_407_3
S_OP1_64_32, KB1, Bacteria

Not on your lists

comp(3960..5384)
DNA (1425bp) protein (475aa)
L-fucose isomerase_2 domain protein n=1 Tax=Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10) RepID=D2C7U9_THENR
L-fucose isomerase _2 domain protein
Tax=S_OP1_64_32
L3_105_000M1_scaffold_407_4
Bacteroides sp. D2, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5371..7938)
DNA (2568bp) protein (856aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.25)
Uncharacterized protein n=1 Tax=Bacteroides sp. D2 RepID=E5CBE1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EFS31990.1}; TaxID=556259 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D2.;"
L3_105_000M1_scaffold_407_5
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7958..9604)
DNA (1647bp) protein (549aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.25)
Uncharacterized protein n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0WXG8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EJZ63922.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
L3_105_000M1_scaffold_407_6
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(9620..10543)
DNA (924bp) protein (308aa)
D-tagatose 3-epimerase {ECO:0000313|EMBL:EGK07060.1}; EC=5.3.1.- {ECO:0000313|EMBL:EGK07060.1};; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Desmospora.;" source="Desmospora sp. 8437.;"
D-tagatose 3-epimerase n=1 Tax=Desmospora sp. 8437 RepID=F5SL39_9BACL
dolichol monophosphate mannose synthase
L3_105_000M1_scaffold_407_7
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(10533..11348)
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI0003666D21
transcriptional regulator, DeoR family
Tax=RBG_16_Spirochaete_67_19_curated
L3_105_000M1_scaffold_407_8
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

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comp(11345..12883)
DNA (1539bp) protein (513aa)
Xylulose kinase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7U2_CALAS
xylB; xylulose kinase
Tax=RBG_13_Chloroflexi_68_17_curated
L3_105_000M1_scaffold_407_9
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12910..13950)
DNA (1041bp) protein (347aa)
GroES-like protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWB0_9CLOT
GroES-like protein {ECO:0000313|EMBL:EDO60057.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
alcohol dehydrogenase GroES domain protein
L3_105_000M1_scaffold_407_10
bacterium UASB270, Bacteria

Not on your lists

comp(13944..14981)
DNA (1038bp) protein (346aa)
Predicted dehydrogenases and related proteins (EC:1.1.1.18)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWA9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:GAK60489.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
L3_105_000M1_scaffold_407_11
unknown

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comp(15065..16828)
DNA (1764bp) protein (588aa)

This feature has no annotations

L3_105_000M1_scaffold_407_12
Firmicutes bacterium CAG:313, Tenericutes, Bacteria

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17141..17512
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Treponema bryantii RepID=UPI0003B2F6D1
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CDD21524.1}; TaxID=1263017 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:313.;"
sigma-70 family RNA polymerase sigma factor
L3_105_000M1_scaffold_407_13
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17536..17862
DNA (327bp) protein (109aa)
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PU74_9FIRM
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CCZ20125.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
L3_105_000M1_scaffold_407_14
unknown

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18042..18770
DNA (729bp) protein (243aa)

This feature has no annotations

L3_105_000M1_scaffold_407_15
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18849..19214)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000371FD32
Uncharacterized protein {ECO:0000313|EMBL:ENZ57541.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_105_000M1_scaffold_407_16
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19269..19691)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2XSB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD54906.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hypothetical protein
L3_105_000M1_scaffold_407_17
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

comp(19951..22587)
DNA (2637bp) protein (879aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BLD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD65938.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_105_000M1_scaffold_407_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22749..23435
DNA (687bp) protein (229aa)
Response regulator receiver domain protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R432_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDR99450.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hssR; heme response regulator HssR
L3_105_000M1_scaffold_407_19
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23432..24505
DNA (1074bp) protein (358aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Two-component system sensor histidine kinase (EC:2.7.3.3)
histidine kinase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E30551
L3_105_000M1_scaffold_407_20
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24502..26238
DNA (1737bp) protein (579aa)
AMP-binding enzyme n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TF43_9FIRM
AMP-dependent synthetase and ligase
Tax=BJP_IG2103_Clostridiales_50_15
L3_105_000M1_scaffold_407_21
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26231..27280
DNA (1050bp) protein (350aa)
Uncharacterized protein n=7 Tax=Clostridium thermocellum RepID=E6UPL0_CLOTL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN53629.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_105_000M1_scaffold_407_22
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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27228..28109
DNA (882bp) protein (294aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (EC:2.1.1.-)
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Lachnospiraceae bacterium NK4A179 RepID=UPI0003B46105
L3_105_000M1_scaffold_407_23
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28693..29196
DNA (504bp) protein (168aa)
Sporulation protein YtfJ n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I2V2_CLOCE
sporulation protein YtfJ
Sporulation protein YtfJ {ECO:0000313|EMBL:EGD48732.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
L3_105_000M1_scaffold_407_24
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29200..30045)
DNA (846bp) protein (282aa)
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (EC:2.6.1.21)
D-amino-acid transaminase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IB34_9FIRM
D-amino-acid transaminase {ECO:0000313|EMBL:CDB42626.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_105_000M1_scaffold_407_25
Clostridium sp. CAG:269, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30042..30614)
DNA (573bp) protein (191aa)
Segregation and condensation protein B n=1 Tax=Clostridium sp. CAG:269 RepID=R7ITD1_9CLOT
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1262788 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:269.;"
segregation and condensation protein B
L3_105_000M1_scaffold_407_26
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30595..31383)
DNA (789bp) protein (263aa)
Segregation and condensation protein A n=1 Tax=Clostridium sp. BNL1100 RepID=H2JCV7_9CLOT
hypothetical protein
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
L3_105_000M1_scaffold_407_27
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31543..32310
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EPD7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE04754.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
peptidase M50
L3_105_000M1_scaffold_407_28
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32407..32595
DNA (189bp) protein (63aa)
Small acid-soluble spore protein alpha/beta type n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VHR3_CLOSH
spore protein
Small acid-soluble spore protein alpha/beta type {ECO:0000313|EMBL:AGC67580.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L3_105_000M1_scaffold_407_29
Clostridium sp. CAG:465, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32675..33703)
DNA (1029bp) protein (343aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1262811 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:465.;"
rnhA; ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Clostridium sp. CAG:465 RepID=R6V8J4_9CLOT
L3_105_000M1_scaffold_407_30
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33703..34503)
DNA (801bp) protein (267aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FVA6_9FIRM
Displaying items 1-30 of 61 in total

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