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L3_105_000M1_scaffold_429

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_429_1
Paenibacillus beijingensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(96..890)
DNA (795bp) protein (265aa)
Uncharacterized protein n=8 Tax=Bacteroides RepID=A7M184_BACOV
DNA alkylation repair protein
DNA alkylation repair protein {ECO:0000313|EMBL:AJY75114.1}; TaxID=1126833 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus beijingensis.;"
L3_105_000M1_scaffold_429_2
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(871..2790)
DNA (1920bp) protein (640aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KLC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN46576.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
beta-lactamase
L3_105_000M1_scaffold_429_3

Not on your lists

comp(2828..3883)
DNA (1056bp) protein (352aa)
Oxidoreductase domain-containing protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FI70_9CLOT
Putative oxidoreductase domain-containing protein {ECO:0000313|EMBL:AIF26021.1}; TaxID=1489298 species="Bacteria; environmental samples.;" source="uncultured bacterium Ad_113_I18_contig2.;"
hypothetical protein
L3_105_000M1_scaffold_429_4
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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4000..5211
DNA (1212bp) protein (404aa)
UPF0348 protein TcarDRAFT_2194 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN95_9FIRM
UPF0348 protein TcarDRAFT_2194 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
hypothetical protein
L3_105_000M1_scaffold_429_5
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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5442..6068
DNA (627bp) protein (209aa)
formiminotransferase-cyclodeaminase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2EB61
Methenyl-THF cyclohydrolase {ECO:0000313|EMBL:CDD65228.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
methenyl tetrahydrofolate cyclohydrolase
L3_105_000M1_scaffold_429_6
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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6065..6916
DNA (852bp) protein (284aa)
methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BHK7_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
L3_105_000M1_scaffold_429_7
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6985..8787
DNA (1803bp) protein (601aa)
Oligoendopeptidase F n=7 Tax=Clostridium thermocellum RepID=A3DI75_CLOTH
oligoendopeptidase F
Oligoendopeptidase F {ECO:0000313|EMBL:ABN53654.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_105_000M1_scaffold_429_8
unknown

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8784..9503
DNA (720bp) protein (240aa)

This feature has no annotations

L3_105_000M1_scaffold_429_9
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9500..11659
DNA (2160bp) protein (720aa)
Putative integral membrane protein n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LWT0_CLOCD
putative integral membrane protein
Putative integral membrane protein {ECO:0000313|EMBL:AEV69791.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_105_000M1_scaffold_429_10
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11649..14213
DNA (2565bp) protein (855aa)
Dolichyl-phosphate-mannose--protein O-mannosyl transferase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUZ7_CLOCD
dolichyl-phosphate-mannose--protein O-mannosyl transferase
Dolichyl-phosphate-mannose--protein O-mannosyl transferase {ECO:0000313|EMBL:AEV69574.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_105_000M1_scaffold_429_11
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14215..14955
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W080_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ38104.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
PP-loop domain-containing protein
L3_105_000M1_scaffold_429_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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14937..15842
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAB2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47290.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_105_000M1_scaffold_429_13
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15844..16743)
DNA (900bp) protein (300aa)
Putative ABC transporter substrate-binding lipoprotein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KSS9_OSCVS
putative ABC transporter substrate-binding lipoprotein
Putative ABC transporter substrate-binding lipoprotein {ECO:0000313|EMBL:BAL00146.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_105_000M1_scaffold_429_14
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16874..17164
DNA (291bp) protein (97aa)
stage III sporulation protein D n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2CC2D
Putative uncharacterized protein {ECO:0000313|EMBL:EEC56723.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
sporulation transcriptional regulator SpoIIID
L3_105_000M1_scaffold_429_15
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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comp(17166..19418)
DNA (2253bp) protein (751aa)
ABC-type multidrug transport system, ATPase and permease components id=3305500 bin=GWF2_Clostridiales_38_85 species=Eubacterium siraeum genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
ABC transporter permease/ATP-binding protein
Tax=GWF2_Clostridiales_38_85_curated
L3_105_000M1_scaffold_429_16
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19437..19964)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PXD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ20888.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
Domain of unknown function (DUF1854)
L3_105_000M1_scaffold_429_17
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19975..22257)
DNA (2283bp) protein (761aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5Q3G9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ20889.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
ABC transporter permease/ATP-binding protein
L3_105_000M1_scaffold_429_18
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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22483..22830
DNA (348bp) protein (116aa)
Transcriptional regulator PadR family n=1 Tax=Roseburia sp. CAG:380 RepID=R6VQT0_9FIRM
Transcriptional regulator PadR family {ECO:0000313|EMBL:CDC96639.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_105_000M1_scaffold_429_19
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

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23301..24026
DNA (726bp) protein (242aa)
UPF0758 protein Amet_2289 n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6FN60_9FIRM
hypothetical protein
Tax=BJP_IG2157_Clostridiales_35_16
L3_105_000M1_scaffold_429_20
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24016..25035
DNA (1020bp) protein (340aa)
rod shape-determining protein Mbl n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E321
rod shape-determining protein MreB
Rod shape-determining protein MreB {ECO:0000313|EMBL:AEV67787.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_105_000M1_scaffold_429_21
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25099..25890
DNA (792bp) protein (264aa)
rod shape-determining protein MreC n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E320
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
rod shape-determining protein MreC
L3_105_000M1_scaffold_429_22
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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25916..26452
DNA (537bp) protein (179aa)
rod shape-determining protein MreD n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B4D580
Rod shape-determining protein MreD
Rod shape-determining protein MreD {ECO:0000313|EMBL:AFV06617.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
L3_105_000M1_scaffold_429_23
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26542..28644
DNA (2103bp) protein (701aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan glycosyltransferase n=1 Tax=Clostridium thermocellum BC1 RepID=U4MLS4_CLOTM
Penicillin-binding protein 2 {ECO:0000313|EMBL:ABN51332.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_105_000M1_scaffold_429_24
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28649..29482)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NYF1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM98917.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_105_000M1_scaffold_429_25
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29487..30437)
DNA (951bp) protein (317aa)
Hydrolase NUDIX family n=1 Tax=Clostridium leptum CAG:27 RepID=R6P8G3_9CLOT
Hydrolase, NUDIX family {ECO:0000313|EMBL:EDO61977.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Inorganic pyrophosphatase
L3_105_000M1_scaffold_429_26
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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comp(30543..31217)
DNA (675bp) protein (225aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
trmB; tRNA (guanine-N(7)-)-methyltransferase TrmB (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NB58_9FIRM
L3_105_000M1_scaffold_429_27
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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31376..32227
DNA (852bp) protein (284aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Clostridium sp. CAG:242 RepID=R6D595_9CLOT
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:CDA79331.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
xylose isomerase domain-containing protein
L3_105_000M1_scaffold_429_28
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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32247..33809
DNA (1563bp) protein (521aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
Methionine--tRNA ligase n=1 Tax=Clostridium thermocellum JW20 RepID=D1NQ81_CLOTM
methionyl-tRNA synthetase
L3_105_000M1_scaffold_429_29
Thermoanaerobacter kivui, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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33826..35205
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Rheinheimera perlucida RepID=UPI00036BDD3D
cell wall-associated hydrolase
Cell wall-associated hydrolase {ECO:0000313|EMBL:AIS53396.1}; TaxID=2325 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter kivui (Acetogenium kivui).;"
L3_105_000M1_scaffold_429_30
unknown

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comp(35151..35435)
DNA (285bp) protein (95aa)

This feature has no annotations

Displaying items 1-30 of 48 in total

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