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L3_105_000M1_scaffold_694

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_694_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..177)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B7 RepID=R0CK48_9CLOT
Helix-turn-helix.
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFB76472.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_694_2
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1021..1434
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B7 RepID=R0BA40_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE14762.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_105_000M1_scaffold_694_3
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1546..1941
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GUQ6_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91477.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Replication initiator protein A (RepA) N-terminus.
L3_105_000M1_scaffold_694_4
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2227..2937
DNA (711bp) protein (237aa)
Plasmid recombination enzyme n=1 Tax=Clostridium sp. M62/1 RepID=D4C877_9CLOT
Plasmid recombination enzyme {ECO:0000313|EMBL:EFE14764.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
plasmid recombination protein
L3_105_000M1_scaffold_694_5
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3458..4687)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5CS08_9FIRM
hypothetical protein
Tax=BJP_IG2069_Clostridiales_48_15
L3_105_000M1_scaffold_694_6
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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4940..8680
DNA (3741bp) protein (1247aa)
rpoB; DNA-directed RNA polymerase beta chain (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AX86_9CLOT
Tax=BJP_IG2069_Clostridiales_48_15
L3_105_000M1_scaffold_694_7
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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8684..12406
DNA (3723bp) protein (1241aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
rpoC; DNA-directed RNA polymerase beta' subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=2 Tax=root RepID=R5AZ16_9FIRM
L3_105_000M1_scaffold_694_8

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12676..13098
DNA (423bp) protein (141aa)
30S ribosomal protein S12 n=2 Tax=root RepID=R5AV18_9FIRM
30S ribosomal protein S12 {ECO:0000313|EMBL:EKC66255.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
rpsL; 30S ribosomal protein S12
L3_105_000M1_scaffold_694_9
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists


13273..13695
DNA (423bp) protein (141aa)
30S ribosomal protein S7 n=1 Tax=human gut metagenome RepID=K1S561_9ZZZZ
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
SSU ribosomal protein S7P
L3_105_000M1_scaffold_694_10
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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13720..15792
DNA (2073bp) protein (691aa)
Elongation factor G n=3 Tax=root RepID=R5AV23_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
fusA; elongation factor G
L3_105_000M1_scaffold_694_11
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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15866..17104
DNA (1239bp) protein (413aa)
Elongation factor Tu n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5B6X0_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
tuf; elongation factor Tu
L3_105_000M1_scaffold_694_12
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(17224..18069)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ER03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX93794.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
CAAX amino terminal protease family.
L3_105_000M1_scaffold_694_13
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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18309..19616
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AVK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45994.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
hypothetical protein
L3_105_000M1_scaffold_694_14
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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19613..20320
DNA (708bp) protein (236aa)
HAD superfamily (subfamily IA) hydrolase, TIGR02254 (EC:3.8.1.2)
HAD hydrolase TIGR02254 family n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ARH3_9FIRM
HAD hydrolase TIGR02254 family {ECO:0000313|EMBL:CCX45995.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L3_105_000M1_scaffold_694_15
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(20687..22750)
DNA (2064bp) protein (688aa)
2-enoate reductase (EC:1.3.1.31)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5B3J3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX45996.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L3_105_000M1_scaffold_694_16
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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23146..23724
DNA (579bp) protein (193aa)
Uncharacterized domain HDIG n=2 Tax=root RepID=R5AZ41_9FIRM
Uncharacterized domain HDIG {ECO:0000313|EMBL:CCX45997.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
uncharacterized domain HDIG
L3_105_000M1_scaffold_694_17
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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24085..24495
DNA (411bp) protein (137aa)
Transcriptional regulator Rrf2 family n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ASU3_9FIRM
Transcriptional regulator Rrf2 family {ECO:0000313|EMBL:CCX45998.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
transcriptional regulator, BadM/Rrf2 family
L3_105_000M1_scaffold_694_18
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

24640..25830
DNA (1191bp) protein (397aa)
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AVM9_9FIRM
Cysteine desulfurase NifS {ECO:0000313|EMBL:CCX45999.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L3_105_000M1_scaffold_694_19
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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25864..26295
DNA (432bp) protein (144aa)
Fe-S iron-sulfur cluster assembly protein NifU family n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ARK7_9FIRM
Fe-S iron-sulfur cluster assembly protein NifU family {ECO:0000313|EMBL:CCX46000.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
iscU; iron-sulfur cluster assembly protein IscU
L3_105_000M1_scaffold_694_20
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(26433..27575)
DNA (1143bp) protein (381aa)
Putative cell division protein FtsW n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5B3J7_9FIRM
Putative cell division protein FtsW {ECO:0000313|EMBL:CCX46001.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
putative cell division protein FtsW
L3_105_000M1_scaffold_694_21
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

27695..28126
DNA (432bp) protein (144aa)
Hydrolase P-loop family n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AZ55_9FIRM
Hydrolase P-loop family {ECO:0000313|EMBL:CCX46002.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
putative hydrolase
L3_105_000M1_scaffold_694_22
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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28120..28830
DNA (711bp) protein (237aa)
Putative molecular chaperone n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ASU6_9FIRM
Putative molecular chaperone {ECO:0000313|EMBL:CCX46003.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
peptidase M22 family protein
L3_105_000M1_scaffold_694_23
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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28866..29495
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
upp; uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=2 Tax=root RepID=R5AVP2_9FIRM
L3_105_000M1_scaffold_694_24
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(29566..30366)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ARM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX46005.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
hypothetical protein
L3_105_000M1_scaffold_694_25
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(30360..31055)
DNA (696bp) protein (232aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5B3K1_9FIRM
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCX46006.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
putative ABC transporter ATP-binding protein
L3_105_000M1_scaffold_694_26
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(31061..31435)
DNA (375bp) protein (125aa)
Putative GntR family transcriptional regulator n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AZ60_9FIRM
Putative GntR family transcriptional regulator {ECO:0000313|EMBL:CCX46007.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
putative GntR family transcriptional regulator
L3_105_000M1_scaffold_694_27
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(31588..32568)
DNA (981bp) protein (327aa)
Predicted permease n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ASU8_9FIRM
Predicted permease {ECO:0000313|EMBL:CCX46008.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
transporter
L3_105_000M1_scaffold_694_28
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(32709..33635)
DNA (927bp) protein (309aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AVP6_9FIRM
DNA (cytosine-5-)-methyltransferase
L3_105_000M1_scaffold_694_29
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(33900..34391)
DNA (492bp) protein (164aa)
Rubrerythrin n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AVQ1_9FIRM
Rubrerythrin {ECO:0000313|EMBL:CCX46014.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L3_105_000M1_scaffold_694_30
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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34486..35217
DNA (732bp) protein (244aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ARN0_9FIRM
hypothetical protein
Displaying items 1-30 of 41 in total

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