ggKbase home page

L3_105_000M1_scaffold_32

Search features with annotation key words

Displaying items 1-30 of 216 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_32_1
Tannerella sp. CAG:118, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(101..1177)
DNA (1077bp) protein (359aa)
Site-specific recombinase XerD n=1 Tax=Tannerella sp. CAG:118 RepID=R5IP91_9PORP
Site-specific recombinase XerD {ECO:0000313|EMBL:CCY38772.1}; TaxID=1262978 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:118.;"
site-specific recombinase XerD
L3_105_000M1_scaffold_32_2
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1886..3010)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Alistipes onderdonkii RepID=UPI0003719D90
Uncharacterized protein {ECO:0000313|EMBL:CCZ96782.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
hypothetical protein
L3_105_000M1_scaffold_32_3
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3012..4253)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:29 RepID=R6Z2G5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD24652.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
glycosyltransferase
L3_105_000M1_scaffold_32_4
Bacteroides sp. CAG:189, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4409..6268)
DNA (1860bp) protein (620aa)
Cobalamin B12-binding domain protein n=1 Tax=Bacteroides sp. CAG:189 RepID=R5J2I5_9BACE
Cobalamin B12-binding domain protein {ECO:0000313|EMBL:CCY48793.1}; TaxID=1262737 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:189.;"
cobalamin B12-binding domain-containing protein
L3_105_000M1_scaffold_32_5
Bacteroides sp. CAG:189, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6268..7335)
DNA (1068bp) protein (356aa)
NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=Bacteroides sp. CAG:189 RepID=R5JID2_9BACE
NAD/NADP octopine/nopaline dehydrogenase {ECO:0000313|EMBL:CCY48791.1}; TaxID=1262737 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:189.;"
NAD/NADP octopine/nopaline dehydrogenase
L3_105_000M1_scaffold_32_6
Planomicrobium glaciei, Planomicrobium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7360..8652)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=U5F615_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETP67673.1}; TaxID=1273538 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planomicrobium.;" source="Planomicrobium glaciei CHR43.;"
biotin carboxylase
L3_105_000M1_scaffold_32_7
Odoribacter laneus, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8649..9827)
DNA (1179bp) protein (393aa)
Putative uncharacterized protein n=1 Tax=Odoribacter laneus YIT 12061 RepID=H1DLB6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EHP45005.1}; TaxID=742817 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter.;" source="Odoribacter laneus YIT 12061.;"
Biotin carboxylase
L3_105_000M1_scaffold_32_8
Odoribacter laneus, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9837..10433)
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Odoribacter laneus YIT 12061 RepID=H1DLB7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EHP45006.1}; TaxID=742817 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter.;" source="Odoribacter laneus YIT 12061.;"
sugar transferase
L3_105_000M1_scaffold_32_9
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10442..11650)
DNA (1209bp) protein (403aa)
capsular polysaccharide biosynthesis protein n=1 Tax=Alistipes sp. JC136 RepID=UPI000289138F
Putative capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:CDD24247.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
UDP-bacillosamine synthetase
L3_105_000M1_scaffold_32_10
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11669..12853)
DNA (1185bp) protein (395aa)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EEC95391.1}; EC=5.1.3.14 {ECO:0000313|EMBL:EEC95391.1};; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BDV8_9PORP
L3_105_000M1_scaffold_32_11
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12860..14038)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:29 RepID=R6XYX6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD24249.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
NAD-dependent epimerase/dehydratase
L3_105_000M1_scaffold_32_12
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14203..15276)
DNA (1074bp) protein (358aa)
Putative dehydratase n=1 Tax=Alistipes sp. CAG:29 RepID=R6XRI6_9BACT
Putative dehydratase {ECO:0000313|EMBL:CDD24250.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
dehydratase
L3_105_000M1_scaffold_32_13
unknown

Not on your lists

comp(15493..15663)
DNA (171bp) protein (57aa)

This feature has no annotations

L3_105_000M1_scaffold_32_14
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

comp(15805..16887)
DNA (1083bp) protein (361aa)
WfgR n=1 Tax=Bacteroides fragilis CAG:47 RepID=R6YV72_9BACE
WfgR
Tax=BJP_08E140C01_Bacteroidetes_41_49
L3_105_000M1_scaffold_32_15
Capnocytophaga cynodegmi, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16881..18317)
DNA (1437bp) protein (479aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00035C0C00
Uncharacterized protein {ECO:0000313|EMBL:CEN33996.1}; TaxID=28189 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga cynodegmi.;"
L3_105_000M1_scaffold_32_16
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18342..19457)
DNA (1116bp) protein (372aa)
PTS system polysaccharide transporter n=1 Tax=Alistipes sp. CAG:29 RepID=R6XKU5_9BACT
PTS system polysaccharide transporter {ECO:0000313|EMBL:CDD24253.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
PTS system polysaccharide transporter
L3_105_000M1_scaffold_32_17
unknown

Not on your lists

19522..19833
DNA (312bp) protein (104aa)

This feature has no annotations

L3_105_000M1_scaffold_32_18
unknown

Not on your lists

comp(19904..20407)
DNA (504bp) protein (168aa)

This feature has no annotations

L3_105_000M1_scaffold_32_19
Alistipes sp. CAG:514, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20498..21025)
DNA (528bp) protein (176aa)
transcriptional regulator n=1 Tax=Alistipes sp. JC136 RepID=UPI0002882434
Uncharacterized protein {ECO:0000313|EMBL:CCX51602.1}; TaxID=1262696 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:514.;"
transcriptional regulator
L3_105_000M1_scaffold_32_20
Coprobacter sp. 177, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21512..21640)
DNA (129bp) protein (43aa)
Site-specific recombinase XerD n=1 Tax=Tannerella sp. CAG:118 RepID=R5IK55_9PORP
Integrase {ECO:0000313|EMBL:KHM48054.1}; TaxID=1572646 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter sp. 177.;"
Site-specific recombinase XerD
L3_105_000M1_scaffold_32_21
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22201..24117
DNA (1917bp) protein (639aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000382BE9A
Outer membrane protein/protective antigen OMA87 {ECO:0000313|EMBL:CDD24951.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
outer membrane protein/protective antigen OMA87
L3_105_000M1_scaffold_32_22
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24217..25899)
DNA (1683bp) protein (561aa)
Ig-like domain-containing surface protein n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7W942_DESOD
cell surface protein
Flavobacterium repeat protein {ECO:0000313|EMBL:AIJ36690.1}; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;"
L3_105_000M1_scaffold_32_23
unknown

Not on your lists

comp(25919..26050)
DNA (132bp) protein (44aa)

This feature has no annotations

L3_105_000M1_scaffold_32_24
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26810..27553)
DNA (744bp) protein (248aa)
succinate dehydrogenase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00031CD640
Succinate dehydrogenase/fumarate reductase Fe-S protein subunit {ECO:0000313|EMBL:CDD24558.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
succinate dehydrogenase/fumarate reductase, Fe-S protein subunit
L3_105_000M1_scaffold_32_25
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27592..29538)
DNA (1947bp) protein (649aa)
menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit (EC:1.3.5.1)
succinate dehydrogenase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00031F2140
Succinate dehydrogenase flavoprotein subunit {ECO:0000313|EMBL:CDE65077.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
L3_105_000M1_scaffold_32_26
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29568..30272)
DNA (705bp) protein (235aa)
fumarate reductase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00037C1F58
succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family
Succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family {ECO:0000313|EMBL:AFL78521.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L3_105_000M1_scaffold_32_27
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30483..30836
DNA (354bp) protein (118aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000381EADC
5,10-methenyltetrahydrofolate synthetase
L3_105_000M1_scaffold_32_28
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31103..32458)
DNA (1356bp) protein (452aa)
Glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.4 1.4.1.3)
glutamate dehydrogenase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002EDECFC
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L3_105_000M1_scaffold_32_29
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32664..33665)
DNA (1002bp) protein (334aa)
sugar kinase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002D45233
Sugar kinase ribokinase {ECO:0000313|EMBL:CDD24228.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
sugar kinase
L3_105_000M1_scaffold_32_30
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33701..34681)
DNA (981bp) protein (327aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F34219
Displaying items 1-30 of 216 in total

View Taxonomy