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L3_105_000M1_scaffold_316

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_316_1
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1..996)
DNA (996bp) protein (332aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Alistipes putredinis CAG:67 RepID=R7JS22_9BACT
L3_105_000M1_scaffold_316_2
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1032..4892)
DNA (3861bp) protein (1287aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00036DE86F
DNA-directed RNA polymerase subunit beta
L3_105_000M1_scaffold_316_3
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5137..5514)
DNA (378bp) protein (126aa)
50S ribosomal protein L7 n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000312A2BC
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
LSU ribosomal protein L12P
L3_105_000M1_scaffold_316_4
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(5553..6074)
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000307A4E8
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
LSU ribosomal protein L10P
L3_105_000M1_scaffold_316_5
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6093..6791)
DNA (699bp) protein (233aa)
50S ribosomal protein L1 n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002EAFC28
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
50S ribosomal protein L1
L3_105_000M1_scaffold_316_6
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(6798..7238)
DNA (441bp) protein (147aa)
50S ribosomal protein L11 n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000376D01F
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
50S ribosomal protein L11
L3_105_000M1_scaffold_316_7
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7255..7815)
DNA (561bp) protein (187aa)
transcription antitermination protein NusG n=1 Tax=Alistipes onderdonkii RepID=UPI0003795A18
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
transcription antitermination protein nusG
L3_105_000M1_scaffold_316_8
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7838..8035)
DNA (198bp) protein (66aa)
preprotein translocase subunit SecE n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003103FC9
Preprotein translocase subunit SecE
Preprotein translocase, SecE subunit {ECO:0000313|EMBL:EFR58783.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
L3_105_000M1_scaffold_316_9
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8174..9361)
DNA (1188bp) protein (396aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
elongation factor Tu n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00035EC9E8
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
L3_105_000M1_scaffold_316_10
unknown

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comp(10174..10734)
DNA (561bp) protein (187aa)

This feature has no annotations

L3_105_000M1_scaffold_316_11
Alistipes finegoldii CAG:68, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10911..11462
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002E3DE3B
acetyltransferase, ribosomal protein N-acetylase
Acetyltransferase ribosomal protein N-acetylase {ECO:0000313|EMBL:CCZ75213.1}; TaxID=1263035 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes finegoldii CAG:68.;"
L3_105_000M1_scaffold_316_12
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11503..12021
DNA (519bp) protein (173aa)
NTP pyrophosphohydrolase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003028344
Hydrolase, NUDIX family {ECO:0000313|EMBL:EFR57543.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
isopentenyldiphosphate isomerase
L3_105_000M1_scaffold_316_13
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11998..13881)
DNA (1884bp) protein (628aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002E2FB3F
WD40-like repeat protein
WD40-like repeat protein {ECO:0000313|EMBL:AFL79288.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L3_105_000M1_scaffold_316_14
Bacteroides sp. CAG:530, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14128..14925)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003063538
Putative rhamnulose-1-phosphate aldolase {ECO:0000313|EMBL:CDA75658.1}; TaxID=1262741 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:530.;"
ribulose-5-phosphate 4-epimerase-like epimerase or aldolase
L3_105_000M1_scaffold_316_15
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14934..15962)
DNA (1029bp) protein (343aa)
sugar:proton symporter n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003063EA2
Uncharacterized protein {ECO:0000313|EMBL:CCX77423.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
rhamnose-proton symporter
L3_105_000M1_scaffold_316_16
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15964..17118)
DNA (1155bp) protein (385aa)
L-1,2-propanediol oxidoreductase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00036A2BB5
Lactaldehyde reductase {ECO:0000313|EMBL:CDD25860.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
L-1,2-propanediol oxidoreductase
L3_105_000M1_scaffold_316_17
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17123..18376)
DNA (1254bp) protein (418aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
sugar isomerase (EC:5.3.1.14)
rhamnose isomerase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000374AE9C
L3_105_000M1_scaffold_316_18
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18403..19827)
DNA (1425bp) protein (475aa)
L-rhamnulokinase (EC:2.7.1.51 2.7.1.5)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000309BC84
Uncharacterized protein {ECO:0000313|EMBL:EHB92379.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
L3_105_000M1_scaffold_316_19
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19938..20828
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F8FDFA
Transcriptional regulator {ECO:0000313|EMBL:CDD25857.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
transcriptional regulator
L3_105_000M1_scaffold_316_20
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21277..22485
DNA (1209bp) protein (403aa)
tdcG; putative L-serine dehydratase (EC:4.3.1.17)
L-serine ammonia-lyase {ECO:0000313|EMBL:EXZ79447.1}; EC=4.3.1.17 {ECO:0000313|EMBL:EXZ79447.1};; TaxID=1339335 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3-F-2 #6.;"
serine dehydratase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000302E3DA
L3_105_000M1_scaffold_316_21
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22541..23515)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002D8C4C8
Putative dihydroorotate dehydrogenase 2 {ECO:0000313|EMBL:EDS03437.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
dihydroorotate dehydrogenase
L3_105_000M1_scaffold_316_22
unknown

Not on your lists

comp(23653..27006)
DNA (3354bp) protein (1118aa)

This feature has no annotations

L3_105_000M1_scaffold_316_23
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27018..27947)
DNA (930bp) protein (310aa)
Calcineurin-like phosphoesterase n=1 Tax=Alistipes shahii WAL 8301 RepID=D4INX2_9BACT
Calcineurin-like phosphoesterase.
Calcineurin-like phosphoesterase {ECO:0000313|EMBL:CBK64634.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_105_000M1_scaffold_316_24
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28947..31127)
DNA (2181bp) protein (727aa)
Putative uncharacterized protein n=1 Tax=Alistipes shahii WAL 8301 RepID=D4INX1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK64633.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_105_000M1_scaffold_316_25
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31146..32666)
DNA (1521bp) protein (507aa)
Putative uncharacterized protein n=1 Tax=Alistipes shahii WAL 8301 RepID=D4INX0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK64632.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_105_000M1_scaffold_316_26
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32674..36249)
DNA (3576bp) protein (1192aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003082EFD
SusC/RagA family TonB-linked outer membrane protein
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EFR57352.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
L3_105_000M1_scaffold_316_27
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36288..37211)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00031FAEA6
Uncharacterized protein {ECO:0000313|EMBL:CDE65504.1}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
hypothetical protein
L3_105_000M1_scaffold_316_28
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37454..37990)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002D28EDB
Uncharacterized protein {ECO:0000313|EMBL:EOA60375.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, Bacteroides expansion family 1
L3_105_000M1_scaffold_316_29
Bacteroides sp. CAG:545, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38307..39188)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002DA0A1D
Glycerophosphodiester phosphodiesterase family protein {ECO:0000313|EMBL:CCZ44320.1}; TaxID=1262742 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:545.;"
glycerophosphoryl diester phosphodiesterase
L3_105_000M1_scaffold_316_30
Bacteroides sp. CAG:545, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39254..40606)
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003127A79
Uncharacterized protein {ECO:0000313|EMBL:CCZ44321.1}; TaxID=1262742 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:545.;"
hypothetical protein
Displaying items 1-30 of 105 in total

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