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L3_105_085G1_scaffold_106

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_085G1_scaffold_106_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(275..1609)
DNA (1335bp) protein (445aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EIJ24277.1}; EC=2.6.1.- {ECO:0000313|EMBL:EIJ24277.1};; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Aspartate/tyrosine/aromatic aminotransferase n=13 Tax=Bifidobacterium RepID=B3DP11_BIFLD
aspartate/tyrosine/aromatic aminotransferase
L3_105_085G1_scaffold_106_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1815..2249
DNA (435bp) protein (145aa)
Transcriptional regulator n=19 Tax=Bifidobacterium RepID=B3DP12_BIFLD
transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:KEY24040.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_105_085G1_scaffold_106_3
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2568..3914
DNA (1347bp) protein (449aa)
Glutamate dehydrogenase n=18 Tax=Bifidobacterium RepID=B3DP13_BIFLD
glutamate dehydrogenase
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L3_105_085G1_scaffold_106_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4291..5712)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=3 Tax=Bacteria RepID=Q8G6K9_BIFLO
AAA+ superfamily ATPase
Putative AAA+ superfamily ATPase {ECO:0000313|EMBL:ACD98874.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_105_085G1_scaffold_106_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6543..7109)
DNA (567bp) protein (189aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=B3DP16_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD98875.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_105_085G1_scaffold_106_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(7179..9830)
DNA (2652bp) protein (884aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
DNA gyrase subunit A n=12 Tax=Bifidobacterium longum RepID=B3DP17_BIFLD
DNA gyrase subunit A
L3_105_085G1_scaffold_106_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9898..12036)
DNA (2139bp) protein (713aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6DAZ2_BIFLN
L3_105_085G1_scaffold_106_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12169..12639)
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZX57_BIFLJ
hypothetical protein
Zn-ribbon-containing RNA-binding protein {ECO:0000313|EMBL:KFI73212.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_105_085G1_scaffold_106_9
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12636..13874)
DNA (1239bp) protein (413aa)
DNA replication and repair protein RecF n=2 Tax=Bifidobacterium RepID=E5XXS1_9BIFI
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|SAAS:SAAS00122784}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
DNA replication and repair protein RecF
L3_105_085G1_scaffold_106_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13902..15026)
DNA (1125bp) protein (375aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
DNA polymerase III subunit beta n=17 Tax=Bifidobacterium RepID=B3DP21_BIFLD
DNA polymerase III subunit beta
L3_105_085G1_scaffold_106_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15761..17263)
DNA (1503bp) protein (501aa)
Chromosomal replication initiator protein DnaA n=16 Tax=Bifidobacterium RepID=DNAA_BIFLD
dnaA; dnaa
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_105_085G1_scaffold_106_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


17582..17716
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=14 Tax=Bifidobacterium RepID=RL34_BIFLD
50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_105_085G1_scaffold_106_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17749..18108
DNA (360bp) protein (120aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Ribonuclease P protein component n=17 Tax=Bifidobacterium RepID=RNPA_BIFLD
ribonuclease P
L3_105_085G1_scaffold_106_14
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18419..19426
DNA (1008bp) protein (336aa)
Membrane protein insertase YidC n=12 Tax=Bifidobacterium RepID=YIDC_BIFLO
yidC2; preprotein translocase subunit
YidC/Oxa1 family membrane protein insertase {ECO:0000313|EMBL:EFV37637.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L3_105_085G1_scaffold_106_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19550..20083
DNA (534bp) protein (178aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=Q8G6J5_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY30885.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_105_085G1_scaffold_106_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20235..20900
DNA (666bp) protein (222aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Ribosomal RNA small subunit methyltransferase G n=12 Tax=Bifidobacterium RepID=RSMG_BIFLD
glucose-inhibited division protein
L3_105_085G1_scaffold_106_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21151..22122
DNA (972bp) protein (324aa)
ATPase for chromosome partitioning n=9 Tax=Bifidobacterium longum RepID=B3DP28_BIFLD
chromosome partitioning protein ParA
ATPase for chromosome partitioning {ECO:0000313|EMBL:ACD98887.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_105_085G1_scaffold_106_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22122..23483
DNA (1362bp) protein (454aa)
Chromosome partitioning protein ParB n=10 Tax=Bifidobacterium RepID=F8APE1_BIFLN
chromosome partitioning protein ParB
Chromosome partitioning protein ParB {ECO:0000313|EMBL:KEY30888.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_105_085G1_scaffold_106_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23790..24809)
DNA (1020bp) protein (340aa)
thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:CBK71360.1}; EC=1.8.1.9 {ECO:0000313|EMBL:CBK71360.1};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Thioredoxin-disulfide reductase n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6DB07_BIFLN
L3_105_085G1_scaffold_106_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24929..26992)
DNA (2064bp) protein (688aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=S3DQK4_BIFLN
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ67587.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
hypothetical protein
L3_105_085G1_scaffold_106_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27075..28802)
DNA (1728bp) protein (576aa)
Integral membrane protein MviN n=8 Tax=Bifidobacterium RepID=E5XXQ8_9BIFI
Conserved hypothetical membrane protein in MviN family {ECO:0000313|EMBL:AAN24473.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
hypothetical protein
L3_105_085G1_scaffold_106_22
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28799..31069)
DNA (2271bp) protein (757aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NFK8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY96126.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
hypothetical protein
L3_105_085G1_scaffold_106_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31066..32358)
DNA (1293bp) protein (431aa)
ADP-ribose pyrophosphatase n=10 Tax=Bifidobacterium RepID=B3DP34_BIFLD
ADP-ribose pyrophosphatase
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:KEY33269.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_105_085G1_scaffold_106_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32445..33860
DNA (1416bp) protein (472aa)
tRNA nucleotidyltransferase n=12 Tax=Bifidobacterium RepID=B3DP35_BIFLD
RNA nucleotidyltransferase
RNA nucleotidyltransferase {ECO:0000313|EMBL:KEY24070.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_105_085G1_scaffold_106_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33945..34574)
DNA (630bp) protein (210aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=B3DP36_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD98895.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_105_085G1_scaffold_106_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34621..35571)
DNA (951bp) protein (317aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=10 Tax=Bifidobacterium RepID=ISPE_BIFLO
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L3_105_085G1_scaffold_106_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(35568..36491)
DNA (924bp) protein (308aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Ribosomal RNA small subunit methyltransferase A n=11 Tax=Bifidobacterium RepID=RSMA_BIFLS
dimethyladenosine transferase
L3_105_085G1_scaffold_106_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36524..38044)
DNA (1521bp) protein (507aa)
Uncharacterized protein n=2 Tax=Bacteria RepID=Q8G6I2_BIFLO
Uncharacterized protein {ECO:0000313|EMBL:AAN24480.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
hypothetical protein
L3_105_085G1_scaffold_106_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38564..39541)
DNA (978bp) protein (326aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=Q8G6I1_BIFLO
DSBA oxidoreductase
DSBA oxidoreductase {ECO:0000313|EMBL:AIW43078.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_105_085G1_scaffold_106_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39719..41866)
DNA (2148bp) protein (716aa)
Widely conserved protein with eukaryotic protein kinase domain n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G6I0_BIFLO
Widely conserved protein with eukaryotic protein kinase domain {ECO:0000313|EMBL:AAN24482.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
hypothetical protein
Displaying items 1-30 of 70 in total

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