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L3_105_085G1_scaffold_164

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Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_085G1_scaffold_164_1
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..355
DNA (354bp) protein (118aa)
ABC-type sugar transport system, ATPase component n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T983_9CLOT
ABC-type sugar transport system, ATPase component {ECO:0000313|EMBL:EKQ56423.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
ABC transporter related protein
L3_105_085G1_scaffold_164_2
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

357..1424
DNA (1068bp) protein (356aa)
Inner membrane ABC transporter permease protein YtfT n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLT0_CLOSA
ytfT; inner membrane ABC transporter permease protein YtfT
Inner membrane ABC transporter permease protein YtfT {ECO:0000313|EMBL:AGX41764.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_105_085G1_scaffold_164_3
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1391..2395
DNA (1005bp) protein (335aa)
Inner membrane ABC transporter permease protein YjfF n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MME5_CLOSA
yjfF; inner membrane ABC transporter permease protein YjfF
Inner membrane ABC transporter permease protein YjfF {ECO:0000313|EMBL:AGX41765.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_105_085G1_scaffold_164_4
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2830..3249
DNA (420bp) protein (140aa)
Methyl-accepting chemotaxis protein McpC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MZV7_CLOSA
mcpC4; methyl-accepting chemotaxis protein McpC
Methyl-accepting chemotaxis protein McpC {ECO:0000313|EMBL:AGX45211.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_105_085G1_scaffold_164_5
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3396..5159
DNA (1764bp) protein (588aa)
Histidine kinase internal region n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M1T7_CLOB8
Histidine kinase internal region {ECO:0000313|EMBL:AJH01522.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
histidine kinase internal region
L3_105_085G1_scaffold_164_6
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5244..5828
DNA (585bp) protein (195aa)
tdk; thymidine kinase Tdk (EC:2.7.1.21)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Thymidine kinase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQ25_CLOSA
L3_105_085G1_scaffold_164_7
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5854..7635
DNA (1782bp) protein (594aa)
Release factor glutamine methyltransferase PrmC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLX6_CLOSA
prmC; release factor glutamine methyltransferase PrmC
Release factor glutamine methyltransferase PrmC {ECO:0000313|EMBL:AGX41523.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_105_085G1_scaffold_164_8
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7694..8776
DNA (1083bp) protein (361aa)
Peptide chain release factor 1 n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBB7_9CLOT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
prfA; peptide chain release factor 1
L3_105_085G1_scaffold_164_9
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8883..9470
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI00030A0F4D
Uncharacterized protein {ECO:0000313|EMBL:ETD69102.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein
L3_105_085G1_scaffold_164_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9491..10540
DNA (1050bp) protein (350aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
tRNA threonylcarbamoyladenosine biosynthesis protein YwlC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPC7_CLOSA
ywlC; tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
L3_105_085G1_scaffold_164_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10644..11093
DNA (450bp) protein (150aa)
ywlF1; putative sugar phosphate isomerase YwlF (EC:5.3.1.-)
Putative sugar phosphate isomerase YwlF {ECO:0000313|EMBL:AGX41527.1}; EC=5.3.1.- {ECO:0000313|EMBL:AGX41527.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Putative sugar phosphate isomerase YwlF n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQ29_CLOSA
L3_105_085G1_scaffold_164_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11141..11770
DNA (630bp) protein (210aa)
upp; uracil phosphoribosyltransferase Upp (EC:2.4.2.9)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
Uracil phosphoribosyltransferase n=4 Tax=Clostridium butyricum RepID=B1R2I3_CLOBU
L3_105_085G1_scaffold_164_13
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11791..12285
DNA (495bp) protein (165aa)
CMP/dCMP deaminase, zinc-binding protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML60_CLOSA
CMP/dCMP deaminase, zinc-binding protein
CMP/dCMP deaminase, zinc-binding protein {ECO:0000313|EMBL:AGX41529.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_105_085G1_scaffold_164_14
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12439..13590
DNA (1152bp) protein (384aa)
putative UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
Putative UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:AGX41530.1}; EC=5.1.3.14 {ECO:0000313|EMBL:AGX41530.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Putative UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLR4_CLOSA
L3_105_085G1_scaffold_164_15
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13966..15144
DNA (1179bp) protein (393aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ETD69108.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ETD69108.1};; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
Acetyl-CoA acetyltransferase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FZJ0_CLOPA
acetyl-CoA acetyltransferase
L3_105_085G1_scaffold_164_16

Not on your lists

15818..16480
DNA (663bp) protein (221aa)
atpB; F0F1 ATP synthase subunit A (EC:3.6.3.14)
ATP synthase subunit a n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UZJ4_CLOBA
ATP synthase subunit a {ECO:0000313|EMBL:ETJ16464.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_105_085G1_scaffold_164_17

Not on your lists

16519..16734
DNA (216bp) protein (72aa)
atpE; F0F1 ATP synthase subunit C (EC:3.6.3.14)
ATP synthase subunit c n=4 Tax=Clostridium botulinum RepID=ATPL_CLOBA
ATP synthase subunit c {ECO:0000313|EMBL:ETJ16465.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_105_085G1_scaffold_164_18

Not on your lists

16794..17288
DNA (495bp) protein (165aa)
ATP synthase subunit b n=4 Tax=Clostridium butyricum RepID=B1R2J0_CLOBU
ATP synthase subunit b {ECO:0000313|EMBL:ETJ16466.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
atpF1; ATP synthase subunit b
L3_105_085G1_scaffold_164_19

Not on your lists

17291..17830
DNA (540bp) protein (180aa)
atpH; F0F1 ATP synthase subunit delta (EC:3.6.3.14)
ATP synthase subunit delta n=3 Tax=Clostridium butyricum RepID=B1R2J1_CLOBU
ATP synthase F1, delta subunit {ECO:0000313|EMBL:ETJ16467.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_105_085G1_scaffold_164_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17841..19355
DNA (1515bp) protein (505aa)
atpA; F0F1 ATP synthase subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000313|EMBL:CDH89433.1};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
ATP synthase subunit alpha n=2 Tax=Clostridium botulinum E RepID=ATPA_CLOBA
L3_105_085G1_scaffold_164_21
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19392..20243
DNA (852bp) protein (284aa)
ATP synthase gamma chain n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQ38_CLOSA
atpG; ATP synthase gamma chain
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_105_085G1_scaffold_164_22
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20258..21652
DNA (1395bp) protein (465aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
atpD1; ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta n=4 Tax=Clostridium butyricum RepID=B1R2J4_CLOBU
L3_105_085G1_scaffold_164_23
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21667..22065
DNA (399bp) protein (133aa)
ATP synthase epsilon chain n=4 Tax=Clostridium butyricum RepID=B1R2J5_CLOBU
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
atpC; ATP synthase epsilon chain
L3_105_085G1_scaffold_164_24
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22323..22958
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLS3_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX41540.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_105_085G1_scaffold_164_25
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22980..24242
DNA (1263bp) protein (421aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FXW8_CLOPA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
L3_105_085G1_scaffold_164_26
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24428..25471
DNA (1044bp) protein (348aa)
Stage II sporulation protein D n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6SX99_9CLOT
Stage II sporulation protein D {ECO:0000313|EMBL:EKQ50823.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
spoIID; stage II sporulation protein D
L3_105_085G1_scaffold_164_27
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25799..26557
DNA (759bp) protein (253aa)
Metalloendopeptidase-like membrane protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLZ7_CLOSA
metalloendopeptidase-like membrane protein
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:AGX41543.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_105_085G1_scaffold_164_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26703..26957
DNA (255bp) protein (85aa)
Stage III sporulation protein D n=5 Tax=Clostridium RepID=U5ML74_CLOSA
spoIIID2; stage III sporulation protein D
Sporulation transcriptional regulator SpoIIID {ECO:0000313|EMBL:ENZ31207.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L3_105_085G1_scaffold_164_29
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27036..28070
DNA (1035bp) protein (345aa)
Cell shape determining protein, MreB/Mrl family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6THX1_9CLOT
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:EKQ50820.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
mreB1; rod shape-determining protein MreB
L3_105_085G1_scaffold_164_30
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28142..28702)
DNA (561bp) protein (187aa)
Sporulation protein YyaC n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBE0_9CLOT
Sporulation protein YyaC {ECO:0000313|EMBL:AJG97129.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
yyaC1; sporulation protein YyaC
Displaying items 1-30 of 63 in total

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