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L3_105_245G1_scaffold_68

Search features with annotation key words

Displaying items 1-30 of 111 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_245G1_scaffold_68_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

410..625
DNA (216bp) protein (72aa)
Uncharacterized protein n=109 Tax=Clostridium difficile RepID=G6BRI7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL21890.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_105_245G1_scaffold_68_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

631..924
DNA (294bp) protein (98aa)
Coat F domain protein n=208 Tax=Clostridium difficile RepID=C9XIY4_CLODC
spore coat protein
Putative spore coat protein {ECO:0000313|EMBL:CCL29578.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_105_245G1_scaffold_68_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1119..1835)
DNA (717bp) protein (239aa)
Putative hydrolase, HAD superfamily, subfamily IA {ECO:0000313|EMBL:CCL29577.1}; EC=3.1.3.- {ECO:0000313|EMBL:CCL29577.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
HAD hydrolase, family IA, variant 1 n=37 Tax=Clostridium difficile RepID=G6BRI5_CLODI
hydrolase
L3_105_245G1_scaffold_68_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1923..3188)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=G6BRI4_CLODI
Tagatose 6 phosphate kinase family protein {ECO:0000313|EMBL:EQG78783.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
tagatose 6-phosphate kinase
L3_105_245G1_scaffold_68_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3292..3600)
DNA (309bp) protein (103aa)
PTS system, fructose-like IIB component {ECO:0000313|EMBL:CCL29575.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCL29575.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Fructose-like phosphotransferase enzyme IIB component 2 n=198 Tax=Clostridium difficile RepID=C9XIY1_CLODC
PTS system transporter subunit fructose-like transporter subunit EIIB
L3_105_245G1_scaffold_68_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3667..4722)
DNA (1056bp) protein (352aa)
PTS system, IIc component n=40 Tax=Clostridium difficile RepID=C9XIY0_CLODC
fructose-like permease EIIC subunit 2
PTS system, fructose-like IIC component {ECO:0000313|EMBL:CCL29574.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_105_245G1_scaffold_68_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4724..5176)
DNA (453bp) protein (151aa)
PTS system, fructose subfamily, IIA component domain protein n=193 Tax=Clostridium difficile RepID=T3IHQ9_CLODC
PTS system, fructose-like IIA component
PTS system, fructose-like IIA component {ECO:0000313|EMBL:CAJ67027.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_105_245G1_scaffold_68_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5173..7203)
DNA (2031bp) protein (677aa)
PRD domain protein n=38 Tax=Clostridium difficile RepID=G6BRI0_CLODI
Transcription antiterminator, PTS operon regulator {ECO:0000313|EMBL:CCL21883.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Transcription antiterminator, PTS operonregulator
L3_105_245G1_scaffold_68_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7459..9693)
DNA (2235bp) protein (745aa)
Diguanylate cyclase domain protein n=8 Tax=Clostridium difficile RepID=G6BRH9_CLODI
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQG78761.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
putative signaling protein
L3_105_245G1_scaffold_68_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10012..13440
DNA (3429bp) protein (1143aa)
Excinuclease ABC, A subunit n=8 Tax=Clostridium difficile RepID=G6BRH8_CLODI
UvrABC system protein A {ECO:0000256|SAAS:SAAS00088996}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative UvrABC system protein A 1 (UvrA protein1) (Excinuclease ABC subunit A 1)
L3_105_245G1_scaffold_68_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13625..14458
DNA (834bp) protein (278aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=G6BRH7_CLODI
conserved hypothetical protein
Alpha/beta hydrolase family {ECO:0000313|EMBL:CKH78825.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ96714.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_105_245G1_scaffold_68_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14587..15108)
DNA (522bp) protein (174aa)
Chromate transport protein n=8 Tax=Clostridium difficile RepID=G6BRH6_CLODI
Putative chromate transporter {ECO:0000313|EMBL:CCL29568.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
chromate transporter
L3_105_245G1_scaffold_68_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15145..15453
DNA (309bp) protein (103aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=G6BRH5_CLODI
LysR-family transcriptional regulator {ECO:0000313|EMBL:CCL21824.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_105_245G1_scaffold_68_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15601..17031)
DNA (1431bp) protein (477aa)
Ser/Thr phosphatase family protein n=8 Tax=Clostridium difficile RepID=G6BRH4_CLODI
Calcineurin-like phosphoesterase family protein {ECO:0000313|EMBL:EQE70478.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
membrane-associated nucleotidase
L3_105_245G1_scaffold_68_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17570..19105)
DNA (1536bp) protein (512aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] n=167 Tax=Clostridium difficile RepID=GUAA_CLOD6
L3_105_245G1_scaffold_68_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19487..19906)
DNA (420bp) protein (140aa)
Uncharacterized protein n=15 Tax=Clostridium difficile RepID=G6BRH2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQI94689.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
hypothetical protein
L3_105_245G1_scaffold_68_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19936..20670)
DNA (735bp) protein (245aa)
Uncharacterized protein n=158 Tax=Clostridium difficile RepID=T3IN47_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL21776.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_105_245G1_scaffold_68_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20754..21536)
DNA (783bp) protein (261aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=D5S4K8_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EFH13882.1}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
hypothetical protein
L3_105_245G1_scaffold_68_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21756..23384)
DNA (1629bp) protein (543aa)
60 kDa chaperonin n=67 Tax=Clostridium difficile RepID=CH60_CLOD6
groL; 60 kDa chaperonin (Protein Cpn60) (GroELprotein)
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_105_245G1_scaffold_68_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23417..23701)
DNA (285bp) protein (95aa)
10 kDa chaperonin n=208 Tax=Clostridium difficile RepID=CH10_CLOD6
10 kDa chaperonin
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_105_245G1_scaffold_68_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23722..23865)
DNA (144bp) protein (48aa)
Uncharacterized protein {ECO:0000313|EMBL:CDS83225.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_105_245G1_scaffold_68_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23894..25384)
DNA (1491bp) protein (497aa)
cls; cardiolipin synthetase 1 (EC:2.7.8.-)
Cardiolipin synthase {ECO:0000256|HAMAP-Rule:MF_01916}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01916};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01916};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Cardiolipin synthase n=28 Tax=Clostridium difficile RepID=T3IPC7_CLODC
L3_105_245G1_scaffold_68_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25402..26277)
DNA (876bp) protein (292aa)
HhH-GPD superbase excision DNA repair family protein n=150 Tax=Clostridium difficile RepID=T3IN42_CLODC
putative DNA glycosylase
HhH-GPD superbase excision DNA repair family protein {ECO:0000313|EMBL:EQE70487.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_105_245G1_scaffold_68_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26571..27602)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=38 Tax=Clostridium difficile RepID=G6BRG5_CLODI
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ67012.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_105_245G1_scaffold_68_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27790..28680
DNA (891bp) protein (297aa)
HTH-type transcriptional regulator CysL n=170 Tax=Clostridium difficile RepID=T3INA8_CLODC
Transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CAJ67011.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_105_245G1_scaffold_68_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28732..29658)
DNA (927bp) protein (309aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative ketopantoate reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase n=9 Tax=Clostridium difficile RepID=G6BRG3_CLODI
L3_105_245G1_scaffold_68_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29873..30457)
DNA (585bp) protein (195aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Orotate phosphoribosyltransferase n=218 Tax=Clostridium difficile RepID=PYRE_CLOD6
pyrE; orotate phosphoribosyltransferase
L3_105_245G1_scaffold_68_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30542..31444)
DNA (903bp) protein (301aa)
dihydroorotate dehydrogenase 1B (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Dihydroorotate dehydrogenase n=1 Tax=Clostridium difficile P59 RepID=T4T3E3_CLODI
L3_105_245G1_scaffold_68_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31437..32129)
DNA (693bp) protein (231aa)
dihydroorotate dehydrogenase electron transfer subunit (EC:1.3.5.2)
Dihydroorotate dehydrogenase electron transfer subunit {ECO:0000313|EMBL:CKH79346.1}; EC=1.3.5.2 {ECO:0000313|EMBL:CKH79346.1};; Dihydroorotate dehydrogenase electron transfersubunit {ECO:0000313|EMBL:CEJ96697.1}; EC=1.3.3.1 {ECO:0000313|EMBL:CEJ96697.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Dihydroorotate dehydrogenase electron transfer subunit n=102 Tax=Clostridium difficile RepID=C9XIV9_CLODC
L3_105_245G1_scaffold_68_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32168..33088)
DNA (921bp) protein (307aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Aspartate carbamoyltransferase n=198 Tax=Clostridium difficile RepID=PYRB_CLOD6
pyrB; aspartate carbamoyltransferase catalytic chain
Displaying items 1-30 of 111 in total

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