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L3_105_245G1_scaffold_108

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_245G1_scaffold_108_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(244..1218)
DNA (975bp) protein (325aa)
Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase {ECO:0000313|EMBL:CKG91750.1}; EC=3.2.1.- {ECO:0000313|EMBL:CKG91750.1};; Putative mannosyl-glycoprotein endo-beta-N-acetylglucosamidase {ECO:0000313|EMBL:CDS84526.1}; Putative mannosyl-glycoproteinendo-beta-N-acetylglucosamidase {ECO:0000313|EMBL:CEJ97592.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=49 Tax=Clostridium difficile RepID=G6BUH0_CLODI
mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
L3_105_245G1_scaffold_108_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1296..2420)
DNA (1125bp) protein (375aa)
mnaA; UDP-N-acetylglucosamine 2-epimerase(UDP-GlcNAc-2-epimerase) (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:CKG91727.1}; EC=5.1.3.14 {ECO:0000313|EMBL:CKG91727.1};; UDP-N-acetylglucosamine 2-epimerase (UDP-GlcNAc-2-epimerase) {ECO:0000313|EMBL:CDS84523.1}; EC=5.1.3.14 {ECO:0000313|EMBL:CDS84523.1};; UDP-N-acetylglucosamine 2-epimerase(UDP-GlcNAc-2-epimerase) {ECO:0000313|EMBL:CEJ97591.1}; EC=5.1.3.14 {ECO:0000313|EMBL:CEJ97591.1};; UDP-N-acetylmannosamine 2-epimerase {ECO:0000313|EMBL:CDS84957.1}; EC=5.1.3.14 {ECO:0000313|EMBL:CDS84957.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
UDP-N-acetylglucosamine 2-epimerase n=101 Tax=Clostridium difficile RepID=T3I3T4_CLODC
L3_105_245G1_scaffold_108_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2474..3547)
DNA (1074bp) protein (358aa)
Cellulase family protein n=36 Tax=Clostridium difficile RepID=T2ZSS0_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL21125.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_105_245G1_scaffold_108_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3596..5677)
DNA (2082bp) protein (694aa)
Uncharacterized protein n=33 Tax=Clostridium difficile RepID=G6BUH3_CLODI
Putative cell wall anchored protein {ECO:0000313|EMBL:CAJ67872.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
putative cell wall anchored protein
L3_105_245G1_scaffold_108_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5700..6956)
DNA (1257bp) protein (419aa)
putative glycosyl transferase, family 2 (EC:2.4.1.-)
Glycosyl transferase 2 family protein n=144 Tax=Clostridium difficile RepID=T3I3V1_CLODC
Glycosyl transferase 2 family protein {ECO:0000313|EMBL:EQG78221.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_105_245G1_scaffold_108_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7005..8669)
DNA (1665bp) protein (555aa)
Uncharacterized protein n=10 Tax=Clostridium difficile RepID=G6BUH5_CLODI
Putative cell wall anchored protein {ECO:0000313|EMBL:CDS84516.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS84949.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative cell wall anchored protein
L3_105_245G1_scaffold_108_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8659..9507)
DNA (849bp) protein (283aa)
Diguanylate cyclase domain protein n=195 Tax=Clostridium difficile RepID=G6BUH6_CLODI
signaling protein
Putative signaling protein {ECO:0000313|EMBL:CCL29048.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_105_245G1_scaffold_108_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9737..10789)
DNA (1053bp) protein (351aa)
Bacterial extracellular solute-binding family protein n=113 Tax=Clostridium difficile RepID=T2TQY9_CLODI
ABC-type transport system,spermidine/putrescine solute-binding protein {ECO:0000313|EMBL:CCL21120.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
potD; spermidine/putrescine ABC transporter substrate-binding protein
L3_105_245G1_scaffold_108_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10789..11463)
DNA (675bp) protein (225aa)
ABC-type transport system,spermidine/putrescine permease n=194 Tax=Clostridium difficile RepID=Q18AM6_CLOD6
potC; spermidine/putrescine ABC transporter permease
ABC-type transport system,spermidine/putrescine permease {ECO:0000313|EMBL:CCL29046.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_105_245G1_scaffold_108_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11568..12404)
DNA (837bp) protein (279aa)
Binding--dependent transport system inner membrane component family protein n=190 Tax=Clostridium difficile RepID=C9XMI1_CLODC
spermidine/putrescine ABC transporter permease
ABC-type transport system,spermidine/putrescine permease {ECO:0000313|EMBL:CCL29045.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_105_245G1_scaffold_108_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12406..13449)
DNA (1044bp) protein (348aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Spermidine/putrescine import ATP-binding protein PotA n=202 Tax=Clostridium difficile RepID=POTA_CLOD6
potA; spermidine/putrescine ABC transporter ATP-binding protein
L3_105_245G1_scaffold_108_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13468..14007)
DNA (540bp) protein (180aa)
Helix-turn-helix family protein n=220 Tax=Clostridium difficile RepID=C9XMH9_CLODC
transcriptional regulator
Putative transcriptional regulator, HTH {ECO:0000313|EMBL:CCK96916.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_105_245G1_scaffold_108_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14443..15132)
DNA (690bp) protein (230aa)
Uncharacterized protein n=57 Tax=Clostridium difficile RepID=T3HZC8_CLODC
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CEJ97580.1}; Uncharacterized BCR%2C YitT family COG1284 {ECO:0000313|EMBL:CKG91447.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_105_245G1_scaffold_108_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15584..17491)
DNA (1908bp) protein (636aa)
CotH protein n=28 Tax=Clostridium difficile RepID=G6BUI3_CLODI
Inner spore coat protein H {ECO:0000313|EMBL:CKG91412.1}; Putative spore coat protein {ECO:0000313|EMBL:CEJ97579.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative spore coat protein
L3_105_245G1_scaffold_108_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17508..18182)
DNA (675bp) protein (225aa)
Uncharacterized protein n=172 Tax=Clostridium difficile RepID=G6B6N7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE67881.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative membrane protein
L3_105_245G1_scaffold_108_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18290..18979)
DNA (690bp) protein (230aa)
VTC domain protein n=66 Tax=Clostridium difficile RepID=T2U920_CLODI
VTC domain protein {ECO:0000313|EMBL:EQE67879.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
conserved hypothetical protein
L3_105_245G1_scaffold_108_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19312..21174)
DNA (1863bp) protein (621aa)
multidrug family ABC transporter ATP-binding protein/permease (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=150 Tax=Clostridium difficile RepID=G6BUI6_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQG78231.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_105_245G1_scaffold_108_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21211..22938)
DNA (1728bp) protein (576aa)
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDS84926.1}; ABC-type transport system, multidrug-family ATP-binding protein/permease {ECO:0000313|EMBL:CDS84495.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDS84495.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC-type transport system, multidrug-familyATP-binding protein/permease (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=49 Tax=Clostridium difficile RepID=G6BUI7_CLODI
L3_105_245G1_scaffold_108_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23011..23841
DNA (831bp) protein (277aa)
MerR regulatory family protein n=53 Tax=Clostridium difficile RepID=T2UZJ9_CLODI
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CAJ67857.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_105_245G1_scaffold_108_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24204..25817)
DNA (1614bp) protein (538aa)
Signaling protein {ECO:0000313|EMBL:CKG91227.1}; EC=3.1.4.52 {ECO:0000313|EMBL:CKG91227.1};; Two-component sensor histidine kinase {ECO:0000313|EMBL:CEJ97573.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Two-component sensor histidine kinase n=167 Tax=Clostridium difficile RepID=Q18AL7_CLOD6
Two-component sensor histidine kinase
L3_105_245G1_scaffold_108_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26022..27509)
DNA (1488bp) protein (496aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=80 Tax=Clostridium difficile RepID=G6BUJ0_CLODI
two-component system sensor histidine kinase
L3_105_245G1_scaffold_108_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27511..28215)
DNA (705bp) protein (235aa)
Response regulator n=161 Tax=Clostridium difficile RepID=T3I4Q3_CLODC
two-component response regulator
Response regulator {ECO:0000313|EMBL:EQG78203.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_105_245G1_scaffold_108_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28708..29190
DNA (483bp) protein (161aa)
Uncharacterized protein n=139 Tax=Clostridium difficile RepID=G6BUJ2_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBE02979.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_105_245G1_scaffold_108_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29322..30071)
DNA (750bp) protein (250aa)
nagB; glucosamine-6-phosphate deaminase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Glucosamine-6-phosphate deaminase n=184 Tax=Clostridium difficile RepID=NAGB_CLOD6
L3_105_245G1_scaffold_108_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30170..31303)
DNA (1134bp) protein (378aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
N-acetylglucosamine-6-phosphate deacetylase n=79 Tax=Clostridium difficile RepID=G6BUJ4_CLODI
nagA; N-acetylglucosamine-6-phosphate deacetylase
L3_105_245G1_scaffold_108_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31313..32047)
DNA (735bp) protein (245aa)
Bacterial regulatory s, gntR family protein n=169 Tax=Clostridium difficile RepID=C9XMG5_CLODC
GntR-family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCL29027.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_105_245G1_scaffold_108_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32342..33184
DNA (843bp) protein (281aa)
Uncharacterized protein n=155 Tax=Clostridium difficile RepID=G6BUJ6_CLODI
S1 domain protein {ECO:0000313|EMBL:EQE67904.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
S1 RNA binding domain
L3_105_245G1_scaffold_108_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33313..33576)
DNA (264bp) protein (88aa)
Uncharacterized protein n=193 Tax=Clostridium difficile RepID=C9YJV9_CLODR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL28966.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_105_245G1_scaffold_108_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33726..34115)
DNA (390bp) protein (130aa)
Acetyltransferase family protein n=70 Tax=Clostridium difficile RepID=T3I508_CLODC
putative acyl-CoA N-acyltransferase
Putative acyl-CoA N-acyltransferase {ECO:0000313|EMBL:CAJ67847.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_105_245G1_scaffold_108_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34407..35588)
DNA (1182bp) protein (394aa)
NAD-dependent malic enzyme (EC:1.1.1.38)
Malic enzyme, NAD binding domain protein n=63 Tax=Clostridium difficile RepID=T2U9E6_CLODI
Putative NAD-dependent malic enzyme {ECO:0000313|EMBL:EHJ31045.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Displaying items 1-30 of 84 in total

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