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L3_105_245G1_scaffold_154

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_245G1_scaffold_154_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(252..515)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80084.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted membrane protein
L3_105_245G1_scaffold_154_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(518..4171)
DNA (3654bp) protein (1218aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00145970};; ATP-dependent helicase/nuclease AddA {ECO:0000256|HAMAP-Rule:MF_01451}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATP-dependent helicase/nuclease subunit A n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV67_9CLOT
recombination helicase AddA, Firmicutes type
L3_105_245G1_scaffold_154_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4162..7566)
DNA (3405bp) protein (1135aa)
ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK12_9CLOT
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000313|EMBL:CDC22297.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATP-dependent nuclease subunit B
L3_105_245G1_scaffold_154_4
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7572..8363)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G7V7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR45761.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L3_105_245G1_scaffold_154_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8643..9500)
DNA (858bp) protein (286aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Diaminopimelate epimerase n=2 Tax=Clostridium RepID=B6FV69_9CLOT
diaminopimelate epimerase
L3_105_245G1_scaffold_154_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9628..10521
DNA (894bp) protein (298aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV70_9CLOT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEA80088.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
AraC family transcriptional regulator
L3_105_245G1_scaffold_154_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10403..11026)
DNA (624bp) protein (208aa)
Putative rRNA methylase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV71_9CLOT
Putative rRNA methylase {ECO:0000313|EMBL:EEA80089.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis
L3_105_245G1_scaffold_154_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11023..12273)
DNA (1251bp) protein (417aa)
GTPase HflX n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV72_9CLOT
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
GTP-binding proten HflX
L3_105_245G1_scaffold_154_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12283..12807)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK17_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22302.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Tetratricopeptide repeat.
L3_105_245G1_scaffold_154_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12827..14689)
DNA (1863bp) protein (621aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PDA7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22303.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cadA; Cadmium-translocating P-type ATPase
L3_105_245G1_scaffold_154_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14713..15072)
DNA (360bp) protein (120aa)
Transcriptional regulator, ArsR family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV75_9CLOT
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EEA80093.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_105_245G1_scaffold_154_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15205..17439)
DNA (2235bp) protein (745aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFD7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22305.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_105_245G1_scaffold_154_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17586..18260)
DNA (675bp) protein (225aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=2 Tax=Clostridium RepID=B6FV78_9CLOT
L3_105_245G1_scaffold_154_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18274..19035)
DNA (762bp) protein (254aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
imidazoleglycerol phosphate synthase, cyclase subunit (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=2 Tax=Clostridium RepID=B6FV79_9CLOT
L3_105_245G1_scaffold_154_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19047..19655)
DNA (609bp) protein (203aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH n=2 Tax=Clostridium RepID=B6FV80_9CLOT
L3_105_245G1_scaffold_154_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19673..21154)
DNA (1482bp) protein (494aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridium RepID=B6FV81_9CLOT
Signal transduction histidine kinase
L3_105_245G1_scaffold_154_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21154..21831)
DNA (678bp) protein (226aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FV82_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22310.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_105_245G1_scaffold_154_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21963..22880)
DNA (918bp) protein (306aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PUX0_9CLOT
signal transduction histidine kinase
L3_105_245G1_scaffold_154_19
unknown

Not on your lists

comp(22886..23047)
DNA (162bp) protein (54aa)

This feature has no annotations

L3_105_245G1_scaffold_154_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23205..23426)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK29_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22312.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_105_245G1_scaffold_154_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23469..24446)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP46_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82232.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_105_245G1_scaffold_154_22
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24461..29653)
DNA (5193bp) protein (1731aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KJA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31570.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
coagulation factor 5/8 type domain-containing protein
L3_105_245G1_scaffold_154_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29783..30823)
DNA (1041bp) protein (347aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
aldose 1-epimerase (EC:5.1.3.3)
Aldose 1-epimerase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PHR5_9CLOT
L3_105_245G1_scaffold_154_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30848..32338)
DNA (1491bp) protein (497aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
UTP-hexose-1-phosphate uridylyltransferase (EC:2.7.7.10)
Galactose-1-phosphate uridylyltransferase n=2 Tax=Clostridium RepID=B6FV87_9CLOT
L3_105_245G1_scaffold_154_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32353..33522)
DNA (1170bp) protein (390aa)
Galactokinase {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00025843}; EC=2.7.1.6 {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015833};; Galactose kinase {ECO:0000256|HAMAP-Rule:MF_00246}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
galactokinase (EC:2.7.1.6)
Galactokinase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFH9_9CLOT
L3_105_245G1_scaffold_154_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33609..34523)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QMA5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23077.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
putative transcriptional regulator
L3_105_245G1_scaffold_154_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34659..35585
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PXA5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23076.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved protein of unknown function cotranscribed with Bmr (bmrU)
L3_105_245G1_scaffold_154_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35588..36394
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PHR1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23075.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Glycerophosphoryl diester phosphodiesterase
L3_105_245G1_scaffold_154_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36493..37143
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PQP4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23074.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
PAP2 superfamily.
L3_105_245G1_scaffold_154_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37169..38929)
DNA (1761bp) protein (587aa)
A/G-specific adenine glycosylase (EC:3.2.2.-)
Sugar fermentation stimulation protein homolog n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFH7_9CLOT
Sugar fermentation stimulation protein homolog {ECO:0000313|EMBL:CDC23073.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Displaying items 1-30 of 74 in total

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