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L3_105_245G1_scaffold_233

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_245G1_scaffold_233_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..113
DNA (111bp) protein (37aa)
Transposase-like protein b n=9 Tax=Clostridium difficile RepID=C9XK93_CLODC
transposase-like protein b
Transposase-like protein b {ECO:0000313|EMBL:CBE02118.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_105_245G1_scaffold_233_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

623..2029
DNA (1407bp) protein (469aa)
6-phospho-beta-glucosidase {ECO:0000313|EMBL:CDS84271.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CDS84271.1};; Aryl-phospho-beta-D-glucosidase BglC {ECO:0000313|EMBL:CDS84710.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CDS84710.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
6-phospho-beta-glucosidase (EC:3.2.1.86)
Aryl-phospho-beta-D-glucosidase BglC n=40 Tax=Clostridium difficile RepID=T2W053_CLODI
L3_105_245G1_scaffold_233_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2057..2905
DNA (849bp) protein (283aa)
PRD domain protein n=136 Tax=Clostridium difficile RepID=C9XM49_CLODC
transcription antiterminator
Transcription antiterminator, PTS operon regulator {ECO:0000313|EMBL:CAJ67653.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_105_245G1_scaffold_233_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3542..4258
DNA (717bp) protein (239aa)
Two-component response regulator n=2 Tax=Clostridium difficile RepID=C9XM50_CLODC
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CBE02769.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_105_245G1_scaffold_233_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4261..5190
DNA (930bp) protein (310aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
two-component sensor histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=9 Tax=Clostridium difficile RepID=G6BUV6_CLODI
L3_105_245G1_scaffold_233_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5338..6261
DNA (924bp) protein (308aa)
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC-type transport system, multidrug-family ATP-binding protein {ECO:0000313|EMBL:CCL20938.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL20938.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC-type transport system, multidrug-family ATP-binding protein n=181 Tax=Clostridium difficile RepID=Q18A20_CLOD6
L3_105_245G1_scaffold_233_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6245..7015
DNA (771bp) protein (257aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=G6BUV4_CLODI
lantibiotic ABC transporter permease
Putative lantibiotic ABC transporter, permease protein {ECO:0000313|EMBL:CBE02774.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_105_245G1_scaffold_233_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7025..7807
DNA (783bp) protein (261aa)
ABC-2 transporter family protein n=133 Tax=Clostridium difficile RepID=T3I3I4_CLODC
ABC-type transport system, multidrug-familypermease
ABC-2 transporter family protein {ECO:0000313|EMBL:EQE68652.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_105_245G1_scaffold_233_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8183..8719
DNA (537bp) protein (179aa)
Rubrerythrin n=199 Tax=Clostridium difficile RepID=C9XM55_CLODC
rbr; rubrerythrin
Rubrerythrin {ECO:0000313|EMBL:CCL20941.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_105_245G1_scaffold_233_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8751..9140
DNA (390bp) protein (130aa)
Transcriptional regulator, Fur family n=170 Tax=Clostridium difficile RepID=G6BUV1_CLODI
oxidative stress regulatory protein
Putative ferric-uptake regulator {ECO:0000313|EMBL:CCL20942.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_105_245G1_scaffold_233_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9177..9563
DNA (387bp) protein (129aa)
rbo; Rubredoxin oxidoreductase (desulfoferrodoxin) (EC:1.15.1.1)
Desulfoferrodoxin ferrous iron-binding domain protein n=185 Tax=Clostridium difficile RepID=T3I3E8_CLODC
Putative superoxide reductase {ECO:0000313|EMBL:EHJ31148.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_105_245G1_scaffold_233_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9690..11132
DNA (1443bp) protein (481aa)
Rubredoxin n=9 Tax=Clostridium difficile RepID=G6BUU9_CLODI
oxidative stress glutamate synthase
Putative oxidative stress glutamate synthase {ECO:0000313|EMBL:CCL20944.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_105_245G1_scaffold_233_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11429..12244
DNA (816bp) protein (272aa)
Metallo-beta-lactamase domain protein n=8 Tax=Clostridium difficile RepID=G6BUU8_CLODI
putative metallo-beta-lactamase superfamilyprotein
Putative metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:CAJ67663.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_105_245G1_scaffold_233_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12846..14030
DNA (1185bp) protein (395aa)
Uncharacterized protein n=201 Tax=Clostridium difficile RepID=G6BUU7_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBE02787.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_105_245G1_scaffold_233_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14407..15534)
DNA (1128bp) protein (376aa)
DEAD-box ATP-dependent RNA helicase CshA family protein n=8 Tax=Clostridium difficile RepID=G6BUU6_CLODI
ATP-dependent RNA helicase
Putative ATP-dependent RNA helicase {ECO:0000313|EMBL:CCL20947.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_105_245G1_scaffold_233_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15979..17172
DNA (1194bp) protein (398aa)
aksA; Trans-homoaconitate synthase (EC:2.3.-.-)
Trans-homoaconitate synthase {ECO:0000313|EMBL:CCL00784.1}; EC=2.3.-.- {ECO:0000313|EMBL:CCL00784.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Homocitrate synthase n=201 Tax=Clostridium difficile RepID=T3I3Z9_CLODC
L3_105_245G1_scaffold_233_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17197..19122
DNA (1926bp) protein (642aa)
Aconitate hydratase {ECO:0000313|EMBL:CKH57062.1}; EC=4.2.1.3 {ECO:0000313|EMBL:CKH57062.1};; EC=4.2.1.85 {ECO:0000313|EMBL:CKH57062.1};; Aconitate hydratase (Citrate hydro-lyase) {ECO:0000313|EMBL:CEJ97381.1}; EC=4.2.1.3 {ECO:0000313|EMBL:CEJ97381.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
acnB; Aconitate hydratase (Citrate hydro-lyase) (EC:4.2.1.3)
Aconitase family protein n=113 Tax=Clostridium difficile RepID=T3I2Z0_CLODC
L3_105_245G1_scaffold_233_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19144..20139
DNA (996bp) protein (332aa)
icd; Isocitrate dehydrogenase (EC:1.1.1.41)
Isocitrate dehydrogenase NAD-dependent {ECO:0000313|EMBL:CCL32933.1}; EC=1.1.1.41 {ECO:0000313|EMBL:CCL32933.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Isocitrate/isopropylmalate dehydrogenase family protein n=188 Tax=Clostridium difficile RepID=T3I7Y2_CLODC
L3_105_245G1_scaffold_233_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20453..20938
DNA (486bp) protein (162aa)
Transcriptional regulator, MarR family n=1 Tax=Clostridium difficile 70-100-2010 RepID=G6BUU2_CLODI
MarR family transcriptional regulator
MarR-family transcriptional regulator {ECO:0000313|EMBL:CBE02796.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_105_245G1_scaffold_233_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20972..21466
DNA (495bp) protein (165aa)
Acetyltransferase family protein n=138 Tax=Clostridium difficile RepID=C9XM66_CLODC
acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:CCL32935.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_105_245G1_scaffold_233_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21545..22084
DNA (540bp) protein (180aa)
Nitroreductase family protein n=2 Tax=Clostridium difficile RepID=T4AZ05_CLODI
Nitroreductase family protein {ECO:0000313|EMBL:EHJ31408.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
reductase
L3_105_245G1_scaffold_233_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22273..22584
DNA (312bp) protein (104aa)
Uncharacterized protein n=215 Tax=Clostridium difficile RepID=G6B6Z8_CLODI
DNA-binding protein
Putative dNA-binding protein {ECO:0000313|EMBL:EQG78378.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_105_245G1_scaffold_233_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22657..23298
DNA (642bp) protein (214aa)
CAAX protease self-immunity family protein n=162 Tax=Clostridium difficile RepID=T3I7Y6_CLODC
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CCL32938.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_105_245G1_scaffold_233_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23530..24414
DNA (885bp) protein (295aa)
FAH family protein n=8 Tax=Clostridium difficile RepID=G6BUT7_CLODI
hydrolase
Putative isomerase/hydrolase {ECO:0000313|EMBL:CCL32939.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_105_245G1_scaffold_233_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24513..25688
DNA (1176bp) protein (392aa)
5-aminoimidazole-4-carboxamide ribonucleotide transformylase (EC:2.1.2.3)
AICARFT/IMPCHase bienzyme n=170 Tax=Clostridium difficile RepID=G6B6Z5_CLODI
AICARFT/IMPCHase bienzyme family protein {ECO:0000313|EMBL:EQE68457.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_105_245G1_scaffold_233_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25816..26670
DNA (855bp) protein (285aa)
Phosphatase 2C family protein n=152 Tax=Clostridium difficile RepID=T3I5T2_CLODC
conserved hypothetical protein
Phosphatase 2C family protein {ECO:0000313|EMBL:EQE68495.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_105_245G1_scaffold_233_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26714..27949
DNA (1236bp) protein (412aa)
Glycosyltransferase, group 1 family protein n=7 Tax=Clostridium difficile RepID=G6BUT4_CLODI
putative glycosyl transferase, group 1
Putative glycosyl transferase, group 1 {ECO:0000313|EMBL:CCL20959.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_105_245G1_scaffold_233_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28050..28991
DNA (942bp) protein (314aa)
Cell surface protein n=179 Tax=Clostridium difficile RepID=C9XM74_CLODC
cell surface protein
Cell wall binding repeat 2 family protein {ECO:0000313|EMBL:EQG78365.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_105_245G1_scaffold_233_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29042..29350)
DNA (309bp) protein (103aa)
Methylthioadenosine nucleosidase domain protein {ECO:0000313|EMBL:EQE68465.1}; EC=3.2.2.9 {ECO:0000313|EMBL:EQE68465.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
methylthioadenosine nucleosidase (EC:3.2.2.9 3.2.2.16)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=G6BUT2_CLODI
L3_105_245G1_scaffold_233_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29427..29891)
DNA (465bp) protein (155aa)
DNA-binding helix-turn-helix protein n=18 Tax=Clostridium difficile RepID=G6BUT1_CLODI
Helix-turn-helix family protein {ECO:0000313|EMBL:EQE68456.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
Displaying items 1-30 of 60 in total

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