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L3_105_245G1_scaffold_289

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_245G1_scaffold_289_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(152..1690)
DNA (1539bp) protein (513aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS79_9CLOT
L3_105_245G1_scaffold_289_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1794..2423)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PM66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24645.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ADP-ribose pyrophosphatase
L3_105_245G1_scaffold_289_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2535..3284)
DNA (750bp) protein (250aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PV71_9CLOT
L3_105_245G1_scaffold_289_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3405..4598)
DNA (1194bp) protein (398aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
3-phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=2 Tax=Clostridium RepID=B6FS82_9CLOT
L3_105_245G1_scaffold_289_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4744..5757)
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=2 Tax=Clostridium RepID=B6FS83_9CLOT
L3_105_245G1_scaffold_289_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5901..6707)
DNA (807bp) protein (269aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS84_9CLOT
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:EEA81154.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_105_245G1_scaffold_289_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6711..7799)
DNA (1089bp) protein (363aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Clostridium RepID=B6FS85_9CLOT
L3_105_245G1_scaffold_289_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7822..8262)
DNA (441bp) protein (147aa)
Fe-S iron-sulfur cluster assembly protein, NifU family n=2 Tax=Clostridium RepID=B6FS86_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24639.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_105_245G1_scaffold_289_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8290..9471)
DNA (1182bp) protein (394aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=2 Tax=Clostridium RepID=B6FS87_9CLOT
L3_105_245G1_scaffold_289_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9483..9938)
DNA (456bp) protein (152aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Clostridium RepID=B6FS88_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24637.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator, BadM/Rrf2 family
L3_105_245G1_scaffold_289_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10075..11406
DNA (1332bp) protein (444aa)
Putative stage V sporulation protein B n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS89_9CLOT
Putative stage V sporulation protein B {ECO:0000313|EMBL:EEA81159.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L3_105_245G1_scaffold_289_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11421..11963)
DNA (543bp) protein (181aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PV51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24619.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_105_245G1_scaffold_289_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12028..12564)
DNA (537bp) protein (179aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
Hydrolase, NUDIX family n=2 Tax=Clostridium RepID=B6FS91_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24617.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_105_245G1_scaffold_289_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12638..14191)
DNA (1554bp) protein (518aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Ribonuclease Y n=2 Tax=Clostridium RepID=B6FS92_9CLOT
metal dependent phosphohydrolase
L3_105_245G1_scaffold_289_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14264..14878)
DNA (615bp) protein (205aa)
Regulatory protein RecX n=2 Tax=Clostridium RepID=B6FS93_9CLOT
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
recX; recombination regulator RecX
L3_105_245G1_scaffold_289_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14880..15902)
DNA (1023bp) protein (341aa)
Protein RecA n=2 Tax=Clostridium RepID=B6FS94_9CLOT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
protein RecA
L3_105_245G1_scaffold_289_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16208..16687)
DNA (480bp) protein (160aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
mgsA; methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=2 Tax=Clostridium RepID=B6FS96_9CLOT
L3_105_245G1_scaffold_289_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16706..18274)
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PV43_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24609.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC transporter permease
L3_105_245G1_scaffold_289_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18274..18969)
DNA (696bp) protein (232aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FS98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24605.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC transporter ATP-binding protein
L3_105_245G1_scaffold_289_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19058..19729)
DNA (672bp) protein (224aa)
Bacterial transferase hexapeptide repeat protein n=2 Tax=Clostridium RepID=B6FS99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24604.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_105_245G1_scaffold_289_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19736..21700)
DNA (1965bp) protein (655aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Topoisomerase IA (EC:5.99.1.2)
DNA topoisomerase n=3 Tax=Clostridium RepID=R6PJU5_9CLOT
L3_105_245G1_scaffold_289_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21833..22918)
DNA (1086bp) protein (362aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=2 Tax=Clostridium RepID=B6FSA3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24602.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_105_245G1_scaffold_289_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22998..24392)
DNA (1395bp) protein (465aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=2 Tax=Clostridium RepID=B6FSA4_9CLOT
L3_105_245G1_scaffold_289_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24411..25058)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSA5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81061.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_105_245G1_scaffold_289_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25165..25932
DNA (768bp) protein (256aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FSA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24595.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L3_105_245G1_scaffold_289_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25925..26722
DNA (798bp) protein (266aa)
ABC transporter, permease protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSA7_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA81063.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L3_105_245G1_scaffold_289_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26788..27579)
DNA (792bp) protein (264aa)
Cof-like hydrolase n=2 Tax=Clostridium RepID=B6FSA8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24509.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
HAD-superfamily hydrolase, subfamily IIB
L3_105_245G1_scaffold_289_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27829..28743)
DNA (915bp) protein (305aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=2 Tax=Clostridium RepID=B6FSA9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24500.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Small-conductance mechanosensitive channel
L3_105_245G1_scaffold_289_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28753..29604)
DNA (852bp) protein (284aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FSB0_9CLOT
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein TIGR00726
L3_105_245G1_scaffold_289_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29615..29968)
DNA (354bp) protein (118aa)
UPF0102 protein CLONEX_03036 n=2 Tax=Clostridium RepID=B6FSB1_9CLOT
UPF0102 protein CLONEX_03036 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
conserved hypothetical protein TIGR00252
Displaying items 1-30 of 58 in total

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