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L3_105_245G1_scaffold_331

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_245G1_scaffold_331_1
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

417..1271
DNA (855bp) protein (285aa)
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Erysipelotrichaceae RepID=H1AX95_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:CDC82984.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
RNA polymerase, sigma subunit, ECF family
L3_105_245G1_scaffold_331_2
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1273..1950
DNA (678bp) protein (226aa)
TIGR02453 family protein n=5 Tax=Firmicutes RepID=E4LVJ5_9CLOT
TIGR02453 family protein {ECO:0000313|EMBL:EFR37161.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_105_245G1_scaffold_331_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2186..2887)
DNA (702bp) protein (234aa)
D-allulose-6-phosphate 3-epimerase {ECO:0000313|EMBL:EQJ55278.1}; EC=5.1.3.- {ECO:0000313|EMBL:EQJ55278.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
D-allulose-6-phosphate 3-epimerase n=5 Tax=Firmicutes RepID=E4LVJ6_9CLOT
L3_105_245G1_scaffold_331_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2951..3943)
DNA (993bp) protein (331aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=H1AX98_9FIRM
Periplasmic binding s and sugar binding domain of LacI family protein {ECO:0000313|EMBL:EQJ55277.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
LacI family transcriptional regulator
L3_105_245G1_scaffold_331_5
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4524..5531)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=4 Tax=Erysipelotrichaceae RepID=G1VUU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY88085.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_105_245G1_scaffold_331_6
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5528..6196)
DNA (669bp) protein (223aa)
Uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=H1AXA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC82978.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
spermidine/putrescine import ATP-binding protein potA
L3_105_245G1_scaffold_331_7
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6174..6806)
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=H1AXA1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC82977.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
Predicted transcriptional regulators
L3_105_245G1_scaffold_331_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7012..7524)
DNA (513bp) protein (171aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Ferritin-like protein n=5 Tax=Firmicutes RepID=E4LVK1_9CLOT
Ferritin-like protein
L3_105_245G1_scaffold_331_9
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7623..9056)
DNA (1434bp) protein (478aa)
ATP-dependent RNA helicase DbpA {ECO:0000313|EMBL:EFR37002.1}; EC=3.6.1.- {ECO:0000313|EMBL:EFR37002.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
dbpA; ATP-dependent RNA helicase dbpA (EC:3.6.4.13)
ATP-dependent RNA helicase DbpA n=2 Tax=Clostridiales RepID=E4LVK2_9CLOT
L3_105_245G1_scaffold_331_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9828..11222)
DNA (1395bp) protein (465aa)
MATE efflux family protein n=2 Tax=Firmicutes RepID=H1B5W8_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EQJ55269.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
MATE efflux family protein
L3_105_245G1_scaffold_331_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11388..12377
DNA (990bp) protein (330aa)
L-aminopeptidase/D-esterase (EC:3.4.11.19)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1AXA5_9FIRM
Peptidase S58 family protein {ECO:0000313|EMBL:EQJ55268.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_105_245G1_scaffold_331_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12443..13684)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1B5W6_9FIRM
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:EQJ55267.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_105_245G1_scaffold_331_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13853..14323)
DNA (471bp) protein (157aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LVK5_9CLOT
Putative aTP/GTP-binding protein {ECO:0000313|EMBL:EQJ55266.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_105_245G1_scaffold_331_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14469..16826
DNA (2358bp) protein (786aa)
CRISPR-associated endonuclease Cas3-HD {ECO:0000313|EMBL:EQJ55265.1}; EC=3.1.-.- {ECO:0000313|EMBL:EQJ55265.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
CRISPR-associated helicase cas3 n=2 Tax=Firmicutes RepID=H1B5W4_9FIRM
CRISPR-associated helicase Cas3
L3_105_245G1_scaffold_331_15
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

17341..18081
DNA (741bp) protein (247aa)
CRISPR-associated protein cas5, subtype I-c/dvulg n=4 Tax=Firmicutes RepID=H1AXA8_9FIRM
CRISPR-associated protein cas5, subtype I-c/dvulg {ECO:0000313|EMBL:EHO31724.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
CRISPR-associated protein Cas5, subtype I-C/DVULG
L3_105_245G1_scaffold_331_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18065..19945
DNA (1881bp) protein (627aa)
CRISPR-associated protein, Csd1 family n=5 Tax=Firmicutes RepID=E4LVK8_9CLOT
CRISPR-associated family protein {ECO:0000313|EMBL:EQJ55263.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
CRISPR-associated protein, Csd1 family
L3_105_245G1_scaffold_331_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19942..20787
DNA (846bp) protein (282aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LVK9_9CLOT
CRISPR-associated , CT1132 family protein {ECO:0000313|EMBL:EQJ55262.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
protein Csd2 family protein
L3_105_245G1_scaffold_331_18
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20774..21442
DNA (669bp) protein (223aa)
CRISPR-associated protein Cas4 n=4 Tax=Firmicutes RepID=E4LVL0_9CLOT
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:EFR37206.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
CRISPR-associated protein Cas4
L3_105_245G1_scaffold_331_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21439..22470
DNA (1032bp) protein (344aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
CRISPR-associated endonuclease Cas1 n=5 Tax=Firmicutes RepID=E4LVL1_9CLOT
CRISPR-associated protein Cas1
L3_105_245G1_scaffold_331_20
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

22477..22770
DNA (294bp) protein (98aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
CRISPR-associated endoribonuclease Cas2 n=5 Tax=Erysipelotrichaceae RepID=G1VUW2_9FIRM
CRISPR-associated endoribonuclease Cas2
L3_105_245G1_scaffold_331_21
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23682..24362)
DNA (681bp) protein (227aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LVL2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC82959.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
hypothetical protein
L3_105_245G1_scaffold_331_22
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24355..25245)
DNA (891bp) protein (297aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LVL3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR37153.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_105_245G1_scaffold_331_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25315..26799)
DNA (1485bp) protein (495aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
Lysine--tRNA ligase n=5 Tax=Firmicutes RepID=E4LVL4_9CLOT
L3_105_245G1_scaffold_331_24
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27287..28981)
DNA (1695bp) protein (565aa)
Oligoendopeptidase, M3 family {ECO:0000313|EMBL:EFR37001.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFR37001.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
M3 family oligoendopeptidase (EC:3.4.24.-)
Oligoendopeptidase, M3 family n=5 Tax=Firmicutes RepID=E4LVL5_9CLOT
L3_105_245G1_scaffold_331_25
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(29267..29515)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium CAG:64 RepID=R6VKG4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC82952.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_105_245G1_scaffold_331_26
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(29888..32914)
DNA (3027bp) protein (1009aa)
HsdR family type I site-specific deoxyribonuclease (EC:3.1.21.3)
Type I site-specific deoxyribonuclease HsdR family protein n=1 Tax=Erysipelotrichaceae bacterium CAG:64 RepID=R6ULS5_9FIRM
Type I site-specific deoxyribonuclease HsdR family protein {ECO:0000313|EMBL:CDC82949.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_105_245G1_scaffold_331_27
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32920..33423)
DNA (504bp) protein (168aa)
Type I Restriction endonuclease S subunit n=1 Tax=Salmonella enterica subsp. enterica serovar Montevideo str. S5-403 RepID=G5QCM2_SALMO
Type I Restriction endonuclease S subunit {ECO:0000313|EMBL:EHC71307.1}; TaxID=913242 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Montevideo str. S5-403.;"
restriction modification system DNA specificity domain-containing protein
L3_105_245G1_scaffold_331_28
Peptostreptococcus anaerobius, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33513..34835)
DNA (1323bp) protein (441aa)
Type I restriction modification DNA specificity domain protein n=1 Tax=Peptostreptococcus anaerobius 653-L RepID=D3MRN1_9FIRM
Type I restriction modification DNA specificity domain protein {ECO:0000313|EMBL:EFD05211.1}; TaxID=596329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="Peptostreptococcus anaerobius 653-L.;"
hypothetical protein
L3_105_245G1_scaffold_331_29
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(34828..35625)
DNA (798bp) protein (266aa)
Uncharacterized protein n=21 Tax=Enterococcus faecalis RepID=F0PHC9_ENTF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOK42640.1}; TaxID=1169251 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0332.;"
L3_105_245G1_scaffold_331_30
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(35618..37189)
DNA (1572bp) protein (524aa)
Type I restriction-modification system M subunit n=1 Tax=Erysipelotrichaceae bacterium CAG:64 RepID=R6UQJ0_9FIRM
Type I restriction-modification system M subunit {ECO:0000313|EMBL:CDC82461.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
type I restriction-modification system, M subunit
Displaying items 1-30 of 34 in total

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