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L3_105_245G1_scaffold_349

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_245G1_scaffold_349_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(298..1521)
DNA (1224bp) protein (408aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
peptidase T (EC:3.4.11.4)
Peptidase T n=2 Tax=Firmicutes RepID=R6VQQ0_9FIRM
L3_105_245G1_scaffold_349_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1583..2029)
DNA (447bp) protein (149aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LSB9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ63524.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_105_245G1_scaffold_349_3
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3151..3435)
DNA (285bp) protein (95aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=E4LSC0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY86076.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_105_245G1_scaffold_349_4
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3555..4025)
DNA (471bp) protein (157aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1BFU2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC84719.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
HxlR-like helix-turn-helix domain-containing protein
L3_105_245G1_scaffold_349_5
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4033..5259)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1BFU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO21290.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
cytochrome C biogenesis protein transmembrane region family
L3_105_245G1_scaffold_349_6
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5269..5586)
DNA (318bp) protein (106aa)
Thioredoxin n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1BFU4_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_105_245G1_scaffold_349_7
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5721..7064)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1BFU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO21292.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
pyridine nucleotide-disulphide oxidoreductase
L3_105_245G1_scaffold_349_8
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7581..8165)
DNA (585bp) protein (195aa)
Uracil-DNA glycosylase, family 4 {ECO:0000313|EMBL:EFR38545.1}; EC=3.2.2.- {ECO:0000313|EMBL:EFR38545.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Uracil-DNA glycosylase, family 4 n=3 Tax=Firmicutes RepID=E4LSC5_9CLOT
uracil DNA glycosylase superfamily protein
L3_105_245G1_scaffold_349_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8174..9598)
DNA (1425bp) protein (475aa)
dGTPase family protein {ECO:0000313|EMBL:EQJ63531.1}; EC=3.1.5.1 {ECO:0000313|EMBL:EQJ63531.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
deoxyguanosinetriphosphate triphosphohydrolase, putative (EC:3.1.5.1)
dGTPase family protein n=4 Tax=Firmicutes RepID=T4P7Y0_CLODI
L3_105_245G1_scaffold_349_10
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(10188..12860)
DNA (2673bp) protein (891aa)
Small GTP-binding protein domain protein n=2 Tax=Erysipelotrichaceae RepID=H1BFU8_9FIRM
Small GTP-binding protein domain protein {ECO:0000313|EMBL:CDC84713.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
small GTP-binding protein domain
L3_105_245G1_scaffold_349_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13302..14654)
DNA (1353bp) protein (451aa)
MATE efflux family protein n=5 Tax=Firmicutes RepID=E4LSD1_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:EQJ63536.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
putative efflux protein, MATE family
L3_105_245G1_scaffold_349_12
unknown

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14929..15282
DNA (354bp) protein (118aa)

This feature has no annotations

L3_105_245G1_scaffold_349_13
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15494..16201)
DNA (708bp) protein (236aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LSD3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR38281.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
NADPH-dependent FMN reductase
L3_105_245G1_scaffold_349_14
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16203..16832)
DNA (630bp) protein (210aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium sp. HGF2 RepID=E4LSD4_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EFR38372.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Transcriptional regulator
L3_105_245G1_scaffold_349_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17131..18549)
DNA (1419bp) protein (473aa)
Amidophosphoribosyltransferase {ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|PIRNR:PIRNR000485}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Glutamine phosphoribosylpyrophosphate amidotransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=5 Tax=Firmicutes RepID=E4LSD5_9CLOT
L3_105_245G1_scaffold_349_16
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19186..20979)
DNA (1794bp) protein (598aa)
ABC transporter, ATP-binding protein n=4 Tax=Firmicutes RepID=E4LSD6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC84707.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
ABC-type multidrug transport system, ATPase and permease components
L3_105_245G1_scaffold_349_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20951..22762)
DNA (1812bp) protein (604aa)
ABC transporter family protein n=1 Tax=Clostridium difficile P28 RepID=T4P769_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQJ63544.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ABC-type multidrug transport system, ATPase and permease components
L3_105_245G1_scaffold_349_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22967..23923)
DNA (957bp) protein (319aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=1 Tax=Clostridium difficile P28 RepID=T4P6Z6_CLODI
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein {ECO:0000313|EMBL:EQJ63545.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
sensory histidine kinase DcuS
L3_105_245G1_scaffold_349_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23911..24630)
DNA (720bp) protein (240aa)
Response regulator n=1 Tax=Clostridium difficile P28 RepID=T4P7Z7_CLODI
Response regulator {ECO:0000313|EMBL:EQJ63546.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ypdB; Transcriptional regulatory protein YpdB
L3_105_245G1_scaffold_349_20
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24808..25365)
DNA (558bp) protein (186aa)
Transcriptional regulator, TetR family n=3 Tax=Firmicutes RepID=E4LSE0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO21305.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_105_245G1_scaffold_349_21
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25931..26632
DNA (702bp) protein (234aa)
ABC transporter, ATP-binding protein n=3 Tax=Firmicutes RepID=E4LSE1_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFR38464.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
ABC transporter ATP binding protein
L3_105_245G1_scaffold_349_22
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

26637..29117
DNA (2481bp) protein (827aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1BFW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO21307.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_105_245G1_scaffold_349_23
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(29756..30145)
DNA (390bp) protein (130aa)
Toxin-antitoxin system, antitoxin component, HicB family n=3 Tax=Firmicutes RepID=E4LSE3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO21308.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_105_245G1_scaffold_349_24
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(30203..30391)
DNA (189bp) protein (63aa)
Toxin-antitoxin system, toxin component, HicA family n=3 Tax=Firmicutes RepID=E4LSE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO21309.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_105_245G1_scaffold_349_25
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31422..32174)
DNA (753bp) protein (251aa)
HAD hydrolase, family IIB n=3 Tax=Firmicutes RepID=E4LSE5_9CLOT
HAD hydrolase, family IIB {ECO:0000313|EMBL:EFR38298.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Predicted hydrolases of the HAD superfamily
L3_105_245G1_scaffold_349_26
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32486..32782)
DNA (297bp) protein (99aa)
6-O-methylguanine DNA methyltransferase, DNA binding domain protein {ECO:0000313|EMBL:EFR38556.1}; EC=2.1.1.63 {ECO:0000313|EMBL:EFR38556.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Predicted methylated DNA-protein cysteine methyltransferase (EC:2.1.1.63)
6-O-methylguanine DNA methyltransferase, DNA binding domain protein n=3 Tax=Firmicutes RepID=E4LSE6_9CLOT
L3_105_245G1_scaffold_349_27
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(33547..34635)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1BFW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO21312.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
type III restriction-modification system subunit Res
L3_105_245G1_scaffold_349_28
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(34604..36313)
DNA (1710bp) protein (570aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1BFW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO21313.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_105_245G1_scaffold_349_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36486..37958)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=E4LSF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ63560.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_105_245G1_scaffold_349_30
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38199..39284
DNA (1086bp) protein (362aa)
Superfamily II helicase n=1 Tax=Clostridium sp. CAG:678 RepID=R5KLI0_9CLOT
Superfamily II helicase {ECO:0000313|EMBL:CCY67695.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
Superfamily II helicase
Displaying 30 items

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