ggKbase home page

L3_105_245G1_scaffold_485

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_245G1_scaffold_485_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42..1691
DNA (1650bp) protein (550aa)
Inorganic pyrophosphatase/exopolyphosphatase (EC:3.6.1.1)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PVB3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22436.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_105_245G1_scaffold_485_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1702..2283
DNA (582bp) protein (194aa)
Flavin reductase-like protein n=2 Tax=Clostridium RepID=B6FJ00_9CLOT
Flavin reductase-like protein {ECO:0000313|EMBL:EEA83990.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L3_105_245G1_scaffold_485_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2386..3057
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNK2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22434.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted xylanase/chitin deacetylase
L3_105_245G1_scaffold_485_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3076..3795
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PDP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22433.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1
L3_105_245G1_scaffold_485_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3809..5140
DNA (1332bp) protein (444aa)
Recombination factor protein RarA (Fragment) n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FIZ7_9CLOT
Recombination factor protein RarA {ECO:0000313|EMBL:EEA83987.1}; Flags: Fragment;; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATPase related to the helicase subunit of the Holliday junction resolvase
L3_105_245G1_scaffold_485_6
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5453..7018
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YBN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD59645.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
Retron-type reverse transcriptase
L3_105_245G1_scaffold_485_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7097..7942)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIZ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA84022.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_105_245G1_scaffold_485_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7945..8673)
DNA (729bp) protein (243aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FIZ4_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEA84021.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
bcrA2; bacitracin transport ATP-binding protein BcrA
L3_105_245G1_scaffold_485_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8794..9306)
DNA (513bp) protein (171aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIZ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA84020.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_105_245G1_scaffold_485_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9319..10251)
DNA (933bp) protein (311aa)
Radical SAM protein, TIGR01212 family n=2 Tax=Clostridium RepID=B6FIZ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22428.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
radical SAM protein, TIGR01212 family
L3_105_245G1_scaffold_485_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10251..11399)
DNA (1149bp) protein (383aa)
Malic enzyme (EC:1.1.1.38)
Malic enzyme, NAD binding domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIZ1_9CLOT
Malic enzyme, NAD binding domain protein {ECO:0000313|EMBL:EEA84018.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_105_245G1_scaffold_485_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11601..12926
DNA (1326bp) protein (442aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Transcription termination factor Rho n=2 Tax=Clostridium RepID=B6FIZ0_9CLOT
transcription termination factor Rho
L3_105_245G1_scaffold_485_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13076..13279
DNA (204bp) protein (68aa)
50S ribosomal protein L31 n=2 Tax=Clostridium RepID=B6FIY9_9CLOT
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
RpmE; 50S ribosomal protein L31
L3_105_245G1_scaffold_485_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13381..14283
DNA (903bp) protein (301aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIY8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA84015.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted metal-dependent enzyme
L3_105_245G1_scaffold_485_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14280..15143
DNA (864bp) protein (288aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Release factor glutamine methyltransferase n=2 Tax=Clostridium RepID=B6FIY7_9CLOT
protein-(glutamine-N5) methyltransferase, release factor-specific
L3_105_245G1_scaffold_485_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15199..16269
DNA (1071bp) protein (357aa)
Peptide chain release factor 1 n=1 Tax=Clostridium nexile CAG:348 RepID=R6QKD4_9CLOT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
bacterial peptide chain release factor 1 (bRF-1)
L3_105_245G1_scaffold_485_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16436..18172
DNA (1737bp) protein (579aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIY5_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEA84012.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC-type multidrug transport system, ATPase and permease components
L3_105_245G1_scaffold_485_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18276..19181
DNA (906bp) protein (302aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22420.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_105_245G1_scaffold_485_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19196..20383
DNA (1188bp) protein (396aa)
Aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.1)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNI5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22419.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_105_245G1_scaffold_485_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20399..21475
DNA (1077bp) protein (359aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PDM4_9CLOT
L3_105_245G1_scaffold_485_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21469..22317
DNA (849bp) protein (283aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIY1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA84008.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted membrane protein
L3_105_245G1_scaffold_485_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22319..23002
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIY0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA84007.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA alkylation repair protein
L3_105_245G1_scaffold_485_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23025..23858
DNA (834bp) protein (278aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIX9_9CLOT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEA84006.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
AraC-type DNA-binding domain-containing proteins
L3_105_245G1_scaffold_485_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23995..24612
DNA (618bp) protein (206aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIX8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22407.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_105_245G1_scaffold_485_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24631..26115
DNA (1485bp) protein (495aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PV78_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22406.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L-fucose isomerase and related proteins
L3_105_245G1_scaffold_485_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26215..27123
DNA (909bp) protein (303aa)
Xylulokinase {ECO:0000313|EMBL:EEA84003.1}; EC=2.7.1.17 {ECO:0000313|EMBL:EEA84003.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
xylulokinase (EC:2.7.1.17)
Xylulokinase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIX6_9CLOT
L3_105_245G1_scaffold_485_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27127..27687
DNA (561bp) protein (187aa)
Xylulokinase {ECO:0000313|EMBL:EEA84003.1}; EC=2.7.1.17 {ECO:0000313|EMBL:EEA84003.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
xylulokinase (EC:2.7.1.17)
Xylulokinase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIX6_9CLOT
Displaying 27 items

View Taxonomy