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L3_105_245G1_scaffold_659

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_245G1_scaffold_659_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..801
DNA (801bp) protein (267aa)
Riboflavin biosynthesis protein RibD n=11 Tax=Enterobacteriaceae RepID=Q3Z4Z5_SHISS
ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1116133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.8.;"
L3_105_245G1_scaffold_659_2
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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890..1360
DNA (471bp) protein (157aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=766155 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1485-80.;"
6,7-dimethyl-8-ribityllumazine synthase n=1503 Tax=Bacteria RepID=RISB_CITK8
ribH; 6,7-dimethyl-8-ribityllumazine synthase
L3_105_245G1_scaffold_659_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1380..1799
DNA (420bp) protein (140aa)
N utilization substance protein B homolog n=1421 Tax=Enterobacteriaceae RepID=NUSB_ECO24
nusB; transcription antitermination protein
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1268997 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908555.;"
L3_105_245G1_scaffold_659_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1877..2854
DNA (978bp) protein (326aa)
thiL; thiamine monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
Thiamine-monophosphate kinase n=182 Tax=Enterobacteriaceae RepID=A7ZIH0_ECO24
L3_105_245G1_scaffold_659_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2832..3350
DNA (519bp) protein (173aa)
pgpA; phosphatidylglycerophosphatase A (EC:3.1.3.27)
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; TaxID=344610 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 53638.;"
Phosphatidylglycerophosphatase A n=677 Tax=Proteobacteria RepID=PGPA_ECOLI
L3_105_245G1_scaffold_659_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3404..4378)
DNA (975bp) protein (325aa)
Uncharacterized oxidoreductase YajO n=218 Tax=Enterobacteriaceae RepID=YAJO_ECOLI
aldoketo-oxidoreductase, NADP-binding YajO
Aldo/keto reductase family protein {ECO:0000313|EMBL:KDY97571.1}; TaxID=1444156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-474-04_S3_C2.;"
L3_105_245G1_scaffold_659_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4433..6295)
DNA (1863bp) protein (621aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=166 Tax=Enterobacteriaceae RepID=DXS_ECO24
L3_105_245G1_scaffold_659_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6320..7219)
DNA (900bp) protein (300aa)
ispA; geranyltranstransferase (EC:2.5.1.10)
Farnesyl diphosphate synthase n=411 Tax=Enterobacteriaceae RepID=ISPA_ECOLI
Polyprenyl synthetase {ECO:0000313|EMBL:EII48113.1}; TaxID=869688 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2.3916.;"
L3_105_245G1_scaffold_659_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7219..7461)
DNA (243bp) protein (81aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
Exodeoxyribonuclease 7 small subunit n=1386 Tax=Enterobacteriaceae RepID=EX7S_ECO24
xseB; exonuclease VII small subunit
L3_105_245G1_scaffold_659_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7667..9115
DNA (1449bp) protein (483aa)
tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00022963}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=869675 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1.2264.;"
tRNA sulfurtransferase n=302 Tax=Enterobacteriaceae RepID=THII_ECO55
thiI; tRNA s(4)U8 sulfurtransferase
L3_105_245G1_scaffold_659_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9169..9759)
DNA (591bp) protein (197aa)
4-methyl-5(Beta-hydroxyethyl)-thiazole monophosphate synthesis n=862 Tax=Enterobacteriaceae RepID=J7Q6C9_ECOLX
yajL; oxidative-stress-resistance chaperone
Chaperone YajL {ECO:0000313|EMBL:ELE58759.1}; TaxID=1182682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE75.;"
L3_105_245G1_scaffold_659_12
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9722..10633)
DNA (912bp) protein (304aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1432547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae IS22.;"
2-dehydropantoate 2-reductase n=75 Tax=Escherichia coli RepID=J7R1A4_ECOLX
L3_105_245G1_scaffold_659_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10801..11292
DNA (492bp) protein (164aa)
Uncharacterized protein n=6 Tax=Enterobacteriaceae RepID=F4NMI0_9ENTR
hypothetical protein
UPF0234 protein YajQ {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=1182683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE76.;"
L3_105_245G1_scaffold_659_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11420..12784)
DNA (1365bp) protein (455aa)
Transporter, major facilitator family n=222 Tax=Escherichia coli RepID=A7ZII1_ECO24
yajR; putative transporter
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFU36220.1}; TaxID=679202 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 85-1.;"
L3_105_245G1_scaffold_659_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13155..14126
DNA (972bp) protein (324aa)
Uncharacterized protein n=165 Tax=Enterobacteriaceae RepID=B6HZN1_ECOSE
hypothetical protein
Sel1 repeat protein {ECO:0000313|EMBL:EFK02914.1}; TaxID=749545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 182-1.;"
L3_105_245G1_scaffold_659_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14182..14724)
DNA (543bp) protein (181aa)
Acetyltransferase, GNAT family n=300 Tax=Enterobacteriaceae RepID=A7ZII3_ECO24
hypothetical protein
Toxin-antitoxin system, toxin component, GNAT family {ECO:0000313|EMBL:ESD75957.1}; TaxID=1268996 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908541.;"
L3_105_245G1_scaffold_659_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14708..15019)
DNA (312bp) protein (104aa)
Uncharacterized protein n=338 Tax=Enterobacteriaceae RepID=B7L664_ECO55
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKI55435.1}; TaxID=1005567 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli N1.;"
L3_105_245G1_scaffold_659_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15204..16094)
DNA (891bp) protein (297aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=749540 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 146-1.;"
Protoheme IX farnesyltransferase n=931 Tax=Enterobacteriaceae RepID=CYOE_ECO24
cyoE; protoheme IX farnesyltransferase
L3_105_245G1_scaffold_659_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16106..16435)
DNA (330bp) protein (110aa)
Cytochrome o ubiquinol oxidase, subunit IV n=22 Tax=Enterobacteriaceae RepID=B6ZQ00_ECO57
cytochrome o ubiquinol oxidase subunit IV
Cytochrome o ubiquinol oxidase CyoD {ECO:0000313|EMBL:ELI33693.1}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
L3_105_245G1_scaffold_659_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16435..17049)
DNA (615bp) protein (205aa)
Cytochrome o ubiquinol oxidase, subunit III {ECO:0000313|EMBL:EHX35913.1}; EC=1.10.3.- {ECO:0000313|EMBL:EHX35913.1};; TaxID=868191 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12A.;"
Cytochrome bo(3) ubiquinol oxidase subunit 3 n=1049 Tax=Enterobacteriaceae RepID=CYOC_ECOL6
cytochrome o ubiquinol oxidase subunit III
L3_105_245G1_scaffold_659_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17039..19030)
DNA (1992bp) protein (664aa)
cyoB; cytochrome o ubiquinol oxidase subunit I (EC:1.10.3.-)
Cytochrome o ubiquinol oxidase, subunit I {ECO:0000313|EMBL:EFJ71850.1}; EC=1.10.3.- {ECO:0000313|EMBL:EFJ71850.1};; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
Cytochrome bo(3) ubiquinol oxidase subunit 1 n=1251 Tax=Enterobacteriaceae RepID=CYOB_ECO57
L3_105_245G1_scaffold_659_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19052..19999)
DNA (948bp) protein (316aa)
Ubiquinol oxidase, subunit II {ECO:0000313|EMBL:EGB85927.1}; EC=1.10.3.- {ECO:0000313|EMBL:EGB85927.1};; TaxID=749539 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 117-3.;"
Cytochrome o ubiquinol oxidase, subunit II n=207 Tax=Enterobacteriaceae RepID=A7ZII9_ECO24
cyoA; cytochrome o ubiquinol oxidase subunit II
Displaying 22 items

View Taxonomy