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L3_105_245G1_scaffold_662

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_245G1_scaffold_662_1
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(41..1417)
DNA (1377bp) protein (459aa)
murC; UDP-N-acetylmuramate--L-alanine ligase MurC (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNA6_CLOSA
L3_105_245G1_scaffold_662_2
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1809..2624
DNA (816bp) protein (272aa)
Purine operon repressor, PurR n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXH9_9CLOT
Purine operon repressor, PurR {ECO:0000313|EMBL:EHI97057.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
pur operon repressor
L3_105_245G1_scaffold_662_3
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2914..3189
DNA (276bp) protein (92aa)
Putative septation protein SpoVG n=1 Tax=Clostridium butyricum 60E.3 RepID=N9ZZD6_CLOBU
SpoVG family protein
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_105_245G1_scaffold_662_4
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3348..4718
DNA (1371bp) protein (457aa)
glmU: bifunctional protein GlmU (EC:2.7.7.23 2.3.1.157)
Bifunctional protein GlmU n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MK35_CLOSA
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_105_245G1_scaffold_662_5
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4768..5859
DNA (1092bp) protein (364aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
Ribose-phosphate pyrophosphokinase n=2 Tax=Clostridium RepID=A6LPJ2_CLOB8
ribose-phosphate pyrophosphokinase
L3_105_245G1_scaffold_662_6
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5955..6641
DNA (687bp) protein (229aa)
Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=A6LPJ3_CLOB8
two component transcriptional regulator
Two component transcriptional regulator {ECO:0000313|EMBL:AJG96796.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L3_105_245G1_scaffold_662_7
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6641..8056
DNA (1416bp) protein (472aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
Integral membrane sensor signal transduction histidine kinase n=2 Tax=Clostridium RepID=A6LPJ4_CLOB8
integral membrane sensor signal transduction histidine kinase
L3_105_245G1_scaffold_662_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8074..8649
DNA (576bp) protein (192aa)
pth; peptidyl-tRNA hydrolase Pth (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Peptidyl-tRNA hydrolase Pth n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKX4_CLOSA
L3_105_245G1_scaffold_662_9
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8664..12167
DNA (3504bp) protein (1168aa)
mfd; transcription-repair-coupling factor Mfd (EC:3.6.4.-)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Transcription-repair-coupling factor n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MK40_CLOSA
L3_105_245G1_scaffold_662_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12322..13359
DNA (1038bp) protein (346aa)
prsA; peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
Putative peptidyl-prolyl cis-trans isomerase n=2 Tax=Clostridium botulinum B RepID=B2TI12_CLOBB
L3_105_245G1_scaffold_662_11
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13617..14168
DNA (552bp) protein (184aa)
Stage V sporulation protein T n=4 Tax=Clostridium butyricum RepID=B1R1T8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ92924.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
spoVT; stage V sporulation protein T
L3_105_245G1_scaffold_662_12
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14282..15817
DNA (1536bp) protein (512aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T818_9CLOT
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:EKQ55978.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
spoVB1; stage V sporulation protein B
L3_105_245G1_scaffold_662_13
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15834..17279
DNA (1446bp) protein (482aa)
MazG family protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXJ0_9CLOT
MazG family protein {ECO:0000313|EMBL:EHI97068.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
MazG family protein
L3_105_245G1_scaffold_662_14
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17514..17789
DNA (276bp) protein (92aa)
DNA-binding protein HU n=1 Tax=Clostridium tetani 12124569 RepID=U6ES41_CLOTA
Uncharacterized protein {ECO:0000313|EMBL:KAJ50822.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
hup; DNA-binding protein HU
L3_105_245G1_scaffold_662_15
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17859..18119
DNA (261bp) protein (87aa)
S4 domain protein n=4 Tax=Clostridium butyricum RepID=B1R1T4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84737.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ribosome-associated heat shock protein implicated in recycling of 50S subunit
L3_105_245G1_scaffold_662_16
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18224..18517
DNA (294bp) protein (98aa)
YabP family protein n=2 Tax=Clostridium RepID=A6LPK3_CLOB8
YabP family protein
YabP family protein {ECO:0000313|EMBL:AJG96806.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L3_105_245G1_scaffold_662_17
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18527..18919
DNA (393bp) protein (131aa)
Spore cortex biosynthesis protein YabQ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKQ6_CLOSA
yabQ; spore cortex biosynthesis protein YabQ
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:AGX41195.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_105_245G1_scaffold_662_18
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18997..19293
DNA (297bp) protein (99aa)
Septum formation initiator n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U506_9CLOT
Septum formation initiator {ECO:0000313|EMBL:EKQ55972.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
septum formation initiator
L3_105_245G1_scaffold_662_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19436..19846
DNA (411bp) protein (137aa)
RNA binding protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP31_CLOSA
RNA binding protein
RNA binding protein {ECO:0000313|EMBL:AGX41197.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Displaying 19 items

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