ggKbase home page

L3_105_245G1_scaffold_724

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_245G1_scaffold_724_1
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

Not on your lists

comp(73..1140)
DNA (1068bp) protein (356aa)
Site-specific recombinase XerD n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6I1Y0_9FIRM
Site-specific recombinase XerD {ECO:0000313|EMBL:CDB43330.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
Phage integrase family.
L3_105_245G1_scaffold_724_2
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1532..2482)
DNA (951bp) protein (317aa)
Metallo-beta-lactamase family protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QXJ7_9FIRM
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:CDF42000.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
hypothetical protein
L3_105_245G1_scaffold_724_3
unknown

Not on your lists

2641..2808
DNA (168bp) protein (56aa)

This feature has no annotations

L3_105_245G1_scaffold_724_4
Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2726..3046)
DNA (321bp) protein (107aa)
Helix-turn-helix domain protein n=2 Tax=Caldicellulosiruptor RepID=E4SAC7_CALKI
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADQ40204.1}; TaxID=632335 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 /; I77R1B).;"
L3_105_245G1_scaffold_724_5
Clostridium phage phiCD24-1, Caudovirales, Viruses

Not on your lists

3186..3395
DNA (210bp) protein (70aa)
Helix-turn-helix family protein n=18 Tax=Clostridium difficile RepID=T3VYD5_CLODI
PbsX family transcriptional regulator
Transcriptional regulator PBSX family (Modular protein) {ECO:0000313|EMBL:CEK40253.1}; TaxID=1582149 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Clostridium phage phiCD24-1.;"
L3_105_245G1_scaffold_724_6
unknown

Not on your lists

comp(3978..4406)
DNA (429bp) protein (143aa)

This feature has no annotations

L3_105_245G1_scaffold_724_7
unknown

Not on your lists

4590..4886
DNA (297bp) protein (99aa)

This feature has no annotations

L3_105_245G1_scaffold_724_8
unknown

Not on your lists

4903..5175
DNA (273bp) protein (91aa)

This feature has no annotations

L3_105_245G1_scaffold_724_9
unknown

Not on your lists

5172..5333
DNA (162bp) protein (54aa)

This feature has no annotations

L3_105_245G1_scaffold_724_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5330..5560
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM41696.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_105_245G1_scaffold_724_11
unknown

Not on your lists

5573..5704
DNA (132bp) protein (44aa)

This feature has no annotations

L3_105_245G1_scaffold_724_12
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5792..5974
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YN46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM53673.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_105_245G1_scaffold_724_13
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

6106..6594
DNA (489bp) protein (163aa)
Siphovirus family protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MCS5_9FIRM
Siphovirus family protein {ECO:0000313|EMBL:CDB93769.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L3_105_245G1_scaffold_724_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6594..7112
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RIS9_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT26173.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
hypothetical protein
L3_105_245G1_scaffold_724_15
Olsenella profusa, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

7097..7438
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Olsenella profusa F0195 RepID=U2TTV5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:ERL09765.1}; TaxID=1125712 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella profusa F0195.;"
hypothetical protein
L3_105_245G1_scaffold_724_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7727..8146
DNA (420bp) protein (140aa)
Single-stranded DNA-binding protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YN40_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
ssb; single-stranded DNA-binding protein
L3_105_245G1_scaffold_724_17
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8582..8818
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) RepID=A3DI89_CLOTH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN53668.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_105_245G1_scaffold_724_18
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

8763..10031
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XX44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14234.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_105_245G1_scaffold_724_19
unknown

Not on your lists

10018..10191
DNA (174bp) protein (58aa)

This feature has no annotations

L3_105_245G1_scaffold_724_20
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10172..10552
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2SK38_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK62977.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_105_245G1_scaffold_724_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10549..10977
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YN37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM53664.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_105_245G1_scaffold_724_22
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10967..12022
DNA (1056bp) protein (352aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Cytosine-specific methyltransferase n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CL65_9FIRM
putative methyltransferase
L3_105_245G1_scaffold_724_23
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12015..12302
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YN36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM53663.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_105_245G1_scaffold_724_24
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

12292..12723
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ETU2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB03365.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
L3_105_245G1_scaffold_724_25
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12720..13049
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CL62_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO23907.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_105_245G1_scaffold_724_26
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13033..13386
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YN33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM53660.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_105_245G1_scaffold_724_27
unknown

Not on your lists

13383..13565
DNA (183bp) protein (61aa)

This feature has no annotations

L3_105_245G1_scaffold_724_28
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13562..13807
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BLV0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI79124.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_105_245G1_scaffold_724_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13758..14063
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YN31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM53658.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_105_245G1_scaffold_724_30
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14065..14433
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RRW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL72009.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Displaying items 1-30 of 37 in total

View Taxonomy