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L3_105_357G1_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_357G1_scaffold_4_1
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(23..2851)
DNA (2829bp) protein (943aa)
Putative type I restriction enzyme R protein n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQA9_BACF6
Putative type I restriction enzyme R protein {ECO:0000313|EMBL:CBW21695.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
hsdR; putative type I restriction enzyme R protein
L3_105_357G1_scaffold_4_2
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2864..3157)
DNA (294bp) protein (98aa)
Putative DNA-binding protein n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQA8_BACF6
putative DNA-binding protein
Putative DNA-binding protein {ECO:0000313|EMBL:CBW21694.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
L3_105_357G1_scaffold_4_3
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3274..5496)
DNA (2223bp) protein (741aa)
Putative transmembrane protein n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQA7_BACF6
Putative transmembrane protein {ECO:0000313|EMBL:CBW21693.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
putative transmembrane protein
L3_105_357G1_scaffold_4_4
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5526..6899)
DNA (1374bp) protein (458aa)
Putative ATP/GTP-binding protein n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQA6_BACF6
putative ATP/GTP-binding protein
Putative ATP/GTP-binding protein {ECO:0000313|EMBL:CBW21692.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
L3_105_357G1_scaffold_4_5
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7020..7340)
DNA (321bp) protein (107aa)
Putative DNA-binding protein n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQA5_BACF6
putative DNA-binding protein
Putative DNA-binding protein {ECO:0000313|EMBL:CBW21691.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
L3_105_357G1_scaffold_4_6
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7450..8463)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQA4_BACF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBW21690.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
L3_105_357G1_scaffold_4_7
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8515..9606)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQA3_BACF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBW21689.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
L3_105_357G1_scaffold_4_8
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9599..9916)
DNA (318bp) protein (106aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=C6IKW6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ72214.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
transcriptional regulator
L3_105_357G1_scaffold_4_9
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10529..11413
DNA (885bp) protein (295aa)
Putative dehydrogenase/oxidoreductase n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQA1_BACF6
putative dehydrogenase/oxidoreductase
Putative dehydrogenase/oxidoreductase {ECO:0000313|EMBL:CBW21687.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
L3_105_357G1_scaffold_4_10
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(11623..15489)
DNA (3867bp) protein (1289aa)
Putative glycosyl hydrolase n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQA0_BACF6
Putative glycosyl hydrolase {ECO:0000313|EMBL:CBW21686.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
putative glycosyl hydrolase
L3_105_357G1_scaffold_4_11
Bacteroides fragilis CAG:47, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15946..17940
DNA (1995bp) protein (665aa)
Putative modification enzyme of type III restriction-modification system n=3 Tax=Bacteroides RepID=E1WQ99_BACF6
Putative modification enzyme of type III restriction-modification system {ECO:0000313|EMBL:CDD40723.1}; TaxID=1263046 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides fragilis CAG:47.;"
putative modification enzyme of type III restriction-modification system
L3_105_357G1_scaffold_4_12
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17962..20994
DNA (3033bp) protein (1011aa)
Putative restriction enzyme of type III restriction-modification system n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQ98_BACF6
DEAD/DEAH box helicase family protein {ECO:0000313|EMBL:EXY28460.1}; TaxID=1339284 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3397 T10.;"
putative restriction enzyme of type III restriction-modification system
L3_105_357G1_scaffold_4_13
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21010..22629
DNA (1620bp) protein (540aa)
Pseudouridine synthase n=4 Tax=Bacteroides fragilis RepID=E1WQ97_BACF6
RluA family pseudouridine synthase {ECO:0000313|EMBL:EKA87419.1}; TaxID=1073387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 615.;"
putative ribosomal large subunit pseudouridine synthase
L3_105_357G1_scaffold_4_14
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22640..23539
DNA (900bp) protein (300aa)
Putative acetyltransferase n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQ96_BACF6
putative acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:CBW21682.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
L3_105_357G1_scaffold_4_15
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23598..26456
DNA (2859bp) protein (953aa)
Conserved hypothetical exported protein n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQ95_BACF6
Conserved hypothetical exported protein {ECO:0000313|EMBL:CBW21681.1}; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
hypothetical protein
L3_105_357G1_scaffold_4_16
Bacteroides sp. 2_1_56FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(26564..26704)
DNA (141bp) protein (47aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_56FAA RepID=F7LM00_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGM97812.1}; TaxID=665938 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_56FAA.;"
hypothetical protein
L3_105_357G1_scaffold_4_17
Bacteroides sp. 2_1_16, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26817..27683)
DNA (867bp) protein (289aa)
Transcriptional regulator, AraC family n=8 Tax=Bacteroides RepID=D1JJN3_9BACE
putative AraC-family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEZ26570.1}; TaxID=469587 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_16.;"
L3_105_357G1_scaffold_4_18
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27906..29396
DNA (1491bp) protein (497aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|SAAS:SAAS00228653}; EC=1.1.1.- {ECO:0000256|SAAS:SAAS00275099};; EC=1.1.1.25 {ECO:0000256|SAAS:SAAS00216361};; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
Putative 3,4-dihydroxy-2-butanone 4-phosphate/shikimate 5-dehydrogenase fusion protein n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQ92_BACF6
putative 3,4-dihydroxy-2-butanone 4-phosphate/shikimate 5-dehydrogenase fusion protein
L3_105_357G1_scaffold_4_19
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29699..30913)
DNA (1215bp) protein (405aa)
mmdB; putative transmembrane methylmalonyl-CoA/oxaloacetate decarboxylase, beta-subunit (EC:4.1.1.41)
Sodium ion-translocating decarboxylase, beta subunit n=9 Tax=Bacteroides RepID=D1JJN1_9BACE
Sodium ion-translocating decarboxylase, beta subunit {ECO:0000313|EMBL:EYB10695.1}; TaxID=1339310 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3783N1-6.;"
L3_105_357G1_scaffold_4_20
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30925..31362)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) RepID=Q5LGF6_BACFN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIY99847.1}; TaxID=997883 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL07T12C05.;"
L3_105_357G1_scaffold_4_21
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31506..31889)
DNA (384bp) protein (128aa)
Uncharacterized protein n=7 Tax=Bacteroides RepID=E1WQ89_BACF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EXZ54784.1}; TaxID=1339299 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3397 T14.;"
L3_105_357G1_scaffold_4_22
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32054..32188)
DNA (135bp) protein (45aa)
Uncharacterized protein n=17 Tax=Bacteroides RepID=E1WQ88_BACF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKA87425.1}; TaxID=1073387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 615.;"
L3_105_357G1_scaffold_4_23
Bacteroides fragilis CAG:47, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32408..34003
DNA (1596bp) protein (532aa)
Putative C4-dicarboxylate anaerobic carrier n=2 Tax=Bacteroides RepID=E1WQ87_BACF6
Putative C4-dicarboxylate anaerobic carrier {ECO:0000313|EMBL:CDD40751.1}; TaxID=1263046 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides fragilis CAG:47.;"
putative C4-dicarboxylate anaerobic carrier
L3_105_357G1_scaffold_4_24
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34132..36921
DNA (2790bp) protein (930aa)
Uncharacterized protein n=2 Tax=Bacteroides fragilis RepID=I9G7D3_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EIY50258.1}; TaxID=997878 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL03T00C08.;"
transglutaminase-family protein
L3_105_357G1_scaffold_4_25
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37044..37472)
DNA (429bp) protein (143aa)
Uncharacterized protein n=9 Tax=Bacteroides RepID=E1WQ85_BACF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EYB10687.1}; TaxID=1339310 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3783N1-6.;"
L3_105_357G1_scaffold_4_26
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37584..38648)
DNA (1065bp) protein (355aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113, ECO:0000313|EMBL:CBW21670.1};; TaxID=862962 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis (strain 638R).;"
DNA polymerase IV n=1 Tax=Bacteroides fragilis (strain 638R) RepID=E1WQ84_BACF6
dinB; putative DNA polymerase IV
L3_105_357G1_scaffold_4_27
Bacteroides fragilis CAG:47, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38812..39828)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis CAG:47 RepID=R6ZIF2_9BACE
two-component system response regulator
Uncharacterized protein {ECO:0000313|EMBL:CDD40756.1}; TaxID=1263046 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides fragilis CAG:47.;"
L3_105_357G1_scaffold_4_28
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39867..42551)
DNA (2685bp) protein (895aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 3_2_5 RepID=C6I4W1_9BACE
Fibronectin type-III family protein {ECO:0000313|EMBL:EXZ79551.1}; TaxID=1339335 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3-F-2 #6.;"
two-component system sensor histidine kinase
L3_105_357G1_scaffold_4_29
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43067..43414
DNA (348bp) protein (116aa)
Uncharacterized protein n=2 Tax=Bacteroides fragilis RepID=E1WQ82_BACF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKA87432.1}; TaxID=1073387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 615.;"
L3_105_357G1_scaffold_4_30
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43785..44939
DNA (1155bp) protein (385aa)
Uncharacterized protein n=9 Tax=Bacteroides RepID=E1WQ81_BACF6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EXZ74293.1}; TaxID=1339314 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3976T8.;"
Displaying items 1-30 of 178 in total

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