ggKbase home page

L3_105_357G1_scaffold_375

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_357G1_scaffold_375_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(57..647)
DNA (591bp) protein (197aa)
Putative permease n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B163_RUMGN
Putative permease {ECO:0000313|EMBL:EDN77985.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
permease
L3_105_357G1_scaffold_375_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(728..1030)
DNA (303bp) protein (101aa)
Transcriptional regulator, ArsR family n=2 Tax=Clostridiales RepID=A7B162_RUMGN
Transcriptional regulator ArsR family {ECO:0000313|EMBL:CCZ67166.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ArsR family transcriptional regulator
L3_105_357G1_scaffold_375_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1127..1726)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TND0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67165.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted metal-dependent phosphoesterases (PHP family)
L3_105_357G1_scaffold_375_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1741..2901)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TV48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67164.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_105_357G1_scaffold_375_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3198..3368
DNA (171bp) protein (57aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TN26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43702.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L3_105_357G1_scaffold_375_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3576..4226
DNA (651bp) protein (217aa)
Transcriptional regulator, MerR family n=2 Tax=Clostridiales RepID=A7B159_RUMGN
Transcriptional regulator MerR family {ECO:0000313|EMBL:CCZ67162.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted transcriptional regulators
L3_105_357G1_scaffold_375_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4217..5560)
DNA (1344bp) protein (448aa)
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=4 Tax=Clostridiales RepID=A7B158_RUMGN
Replicative DNA helicase {ECO:0000313|EMBL:EGN43704.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_105_357G1_scaffold_375_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5576..6022)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=4 Tax=Clostridiales RepID=A7B157_RUMGN
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
LSU ribosomal protein L9P
L3_105_357G1_scaffold_375_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6024..8063)
DNA (2040bp) protein (680aa)
DHHA1 domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B156_RUMGN
DHHA1 domain protein {ECO:0000313|EMBL:EDN77978.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L3_105_357G1_scaffold_375_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8162..9364)
DNA (1203bp) protein (401aa)
Putative ATP synthase F0, A subunit n=2 Tax=Clostridiales RepID=A7B155_RUMGN
Putative ATP synthase F0 A subunit {ECO:0000313|EMBL:CCZ67158.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted permease
L3_105_357G1_scaffold_375_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9525..9791)
DNA (267bp) protein (89aa)
30S ribosomal protein S18 n=4 Tax=Clostridiales RepID=A7B154_RUMGN
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
SSU ribosomal protein S18P
L3_105_357G1_scaffold_375_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9831..10277)
DNA (447bp) protein (149aa)
Single-stranded DNA-binding protein n=4 Tax=Clostridiales RepID=A7B153_RUMGN
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
single-strand binding protein
L3_105_357G1_scaffold_375_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10294..10704)
DNA (411bp) protein (137aa)
30S ribosomal protein S6 n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B152_RUMGN
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
SSU ribosomal protein S6P
L3_105_357G1_scaffold_375_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10701..10889)
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B151_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ67154.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_105_357G1_scaffold_375_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10893..11681)
DNA (789bp) protein (263aa)
Sortase, SrtB family n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B150_RUMGN
Sortase, SrtB family {ECO:0000313|EMBL:EDN77972.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
sortase, SrtB family
L3_105_357G1_scaffold_375_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11718..12353)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UE40_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67152.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Uncharacterised ACR, YkgG family COG1556.
L3_105_357G1_scaffold_375_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12335..13246)
DNA (912bp) protein (304aa)
Cof-like hydrolase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B148_RUMGN
Cof-like hydrolase {ECO:0000313|EMBL:EDN77970.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
HAD-superfamily hydrolase, subfamily IIB
L3_105_357G1_scaffold_375_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13384..14898)
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B147_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77969.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ATPase family associated with various cellular activities (AAA).
L3_105_357G1_scaffold_375_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14889..16217)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BT94_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18012.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Predicted metallopeptidase (DUF2201).
L3_105_357G1_scaffold_375_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16243..17211)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B145_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77967.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_105_357G1_scaffold_375_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17396..19924)
DNA (2529bp) protein (843aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B144_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN42501.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
transglutaminase domain-containing protein
L3_105_357G1_scaffold_375_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19915..21324)
DNA (1410bp) protein (470aa)
leucyl aminopeptidase (EC:3.4.11.1)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BTC2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18015.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_105_357G1_scaffold_375_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21341..22213)
DNA (873bp) protein (291aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B142_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN42503.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_105_357G1_scaffold_375_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22287..24281)
DNA (1995bp) protein (665aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TV29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD18017.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
beta-galactosidase trimerisation domain-containing protein
L3_105_357G1_scaffold_375_25
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24301..25149)
DNA (849bp) protein (283aa)
ABC transporter, permease protein n=4 Tax=Clostridiales RepID=A7B140_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN42505.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC transporter permease
L3_105_357G1_scaffold_375_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25162..26049)
DNA (888bp) protein (296aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BSF3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18019.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
permease component of ABC-type sugar transporter
L3_105_357G1_scaffold_375_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26129..27445)
DNA (1317bp) protein (439aa)
ABC transporter, solute-binding protein n=3 Tax=Lachnospiraceae RepID=A7B138_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18020.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC transporter substrate-binding protein
L3_105_357G1_scaffold_375_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27651..29360
DNA (1710bp) protein (570aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BU83_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN42508.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_105_357G1_scaffold_375_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29351..30856
DNA (1506bp) protein (502aa)
Uncharacterized protein n=2 Tax=Ruminococcus gnavus RepID=A7B135_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18022.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
two component transcriptional regulator, arac family
L3_105_357G1_scaffold_375_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30906..31091)
DNA (186bp) protein (62aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TN06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN42510.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
Displaying items 1-30 of 33 in total

View Taxonomy