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L3_105_357G1_scaffold_397

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_357G1_scaffold_397_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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416..2380
DNA (1965bp) protein (655aa)
electron transporter RnfC n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002FC02CD
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
rnfC2; electron transport complex protein RnfC2
L3_105_357G1_scaffold_397_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2382..3002
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEG9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76590.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Methylene-tetrahydrofolate reductase C terminal.
L3_105_357G1_scaffold_397_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3028..3906
DNA (879bp) protein (293aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Methylenetetrahydrofolate reductase n=2 Tax=Ruminococcus RepID=C6JEH0_9FIRM
5,10-methylenetetrahydrofolate reductase
L3_105_357G1_scaffold_397_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4032..4895)
DNA (864bp) protein (288aa)
ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPL7_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDD80184.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_105_357G1_scaffold_397_5
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4910..5818)
DNA (909bp) protein (303aa)
ABC transporter, permease protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZX14_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EDM85895.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_105_357G1_scaffold_397_6
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5897..7225)
DNA (1329bp) protein (443aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LUD3_9FIRM
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL24391.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L3_105_357G1_scaffold_397_7
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7312..8325)
DNA (1014bp) protein (338aa)
Sugar-binding domain protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZX12_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:EDM85893.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
transcriptional regulator, LacI family
L3_105_357G1_scaffold_397_8
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8722..11157
DNA (2436bp) protein (812aa)
cellobiose phosphorylase (EC:2.4.1.20)
Glycosyltransferase family 36 n=2 Tax=Clostridiales RepID=A5ZX10_9FIRM
Glycosyltransferase family 36 {ECO:0000313|EMBL:EDM85891.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_105_357G1_scaffold_397_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11254..13215)
DNA (1962bp) protein (654aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEH1_9FIRM
L3_105_357G1_scaffold_397_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13754..14809
DNA (1056bp) protein (352aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CCY5_9FIRM
L3_105_357G1_scaffold_397_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14825..15325
DNA (501bp) protein (167aa)
PHP domain-containing protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CFG7_9FIRM
PHP domain-containing protein {ECO:0000313|EMBL:CDD76073.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted membrane protein
L3_105_357G1_scaffold_397_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15764..17161
DNA (1398bp) protein (466aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Transcription termination factor Rho n=2 Tax=Ruminococcus RepID=C6JEH4_9FIRM
transcription termination factor Rho
L3_105_357G1_scaffold_397_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17349..17552
DNA (204bp) protein (68aa)
50S ribosomal protein L31 n=2 Tax=Ruminococcus RepID=C6JEH5_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
LSU ribosomal protein L31P
L3_105_357G1_scaffold_397_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17627..18595
DNA (969bp) protein (323aa)
Predicted metal-dependent enzyme n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CCX0_9FIRM
Predicted metal-dependent enzyme {ECO:0000313|EMBL:CDD76059.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted metal-dependent enzyme
L3_105_357G1_scaffold_397_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18592..19557
DNA (966bp) protein (322aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Release factor glutamine methyltransferase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEH6_9FIRM
protein-(glutamine-N5) methyltransferase, release factor-specific
L3_105_357G1_scaffold_397_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19550..20626
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEH7_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
bacterial peptide chain release factor 1 (bRF-1)
L3_105_357G1_scaffold_397_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20707..21624
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76599.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
dTDP-glucose pyrophosphorylase
L3_105_357G1_scaffold_397_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21756..23102
DNA (1347bp) protein (449aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=2 Tax=Ruminococcus RepID=C6JEH9_9FIRM
L3_105_357G1_scaffold_397_19
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23123..24172
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CE92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76047.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_105_357G1_scaffold_397_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24197..25432
DNA (1236bp) protein (412aa)
GTPase HflX n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEI1_9FIRM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
GTP-binding protein HflX
L3_105_357G1_scaffold_397_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25647..28025
DNA (2379bp) protein (793aa)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=2 Tax=Ruminococcus RepID=C6JEI2_9FIRM
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDD76045.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_105_357G1_scaffold_397_22
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28060..28488
DNA (429bp) protein (143aa)
Amino acid-binding ACT domain-containing protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CFD5_9FIRM
Amino acid-binding ACT domain-containing protein {ECO:0000313|EMBL:CDD76043.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ACT domain-containing protein
L3_105_357G1_scaffold_397_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28654..29088
DNA (435bp) protein (145aa)
Rrf2 family protein n=2 Tax=Ruminococcus RepID=C6JEI4_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDD76041.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
transcriptional regulator, BadM/Rrf2 family
L3_105_357G1_scaffold_397_24
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29180..30109
DNA (930bp) protein (310aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEI5_9FIRM
L3_105_357G1_scaffold_397_25
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30292..31374
DNA (1083bp) protein (361aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CCU9_9FIRM
L3_105_357G1_scaffold_397_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31644..32957
DNA (1314bp) protein (438aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CFD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76038.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Displaying 26 items

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