ggKbase home page

L3_105_357G1_scaffold_416

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_357G1_scaffold_416_1
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(147..974)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CH16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77321.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_105_357G1_scaffold_416_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1068..2348)
DNA (1281bp) protein (427aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CH95_9FIRM
L3_105_357G1_scaffold_416_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2493..3926)
DNA (1434bp) protein (478aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J984_9FIRM
L3_105_357G1_scaffold_416_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4055..4741)
DNA (687bp) protein (229aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J985_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77318.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
amino acid ABC transporter ATP-binding protein
L3_105_357G1_scaffold_416_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4808..5458)
DNA (651bp) protein (217aa)
Amino acid ABC transporter membrane protein PAAT family (TC 3.A.1.3.-) n=2 Tax=Ruminococcus RepID=R7CHW1_9FIRM
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region {ECO:0000313|EMBL:EQM98902.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
L3_105_357G1_scaffold_416_6
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5594..6490)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5LKB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM98903.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L3_105_357G1_scaffold_416_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6598..7392)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J987_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78889.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_105_357G1_scaffold_416_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7406..8653)
DNA (1248bp) protein (416aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J988_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77312.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_105_357G1_scaffold_416_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8637..12224)
DNA (3588bp) protein (1196aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J989_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78891.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_105_357G1_scaffold_416_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12615..13421
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J990_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78892.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Putative cell wall binding repeat.
L3_105_357G1_scaffold_416_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13705..15066
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJ28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77308.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
putative efflux protein, MATE family
L3_105_357G1_scaffold_416_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15177..16226)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CH07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77306.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Dioxygenases related to 2-nitropropane dioxygenase
L3_105_357G1_scaffold_416_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16410..18470)
DNA (2061bp) protein (687aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J993_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78895.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Signal transduction histidine kinase
L3_105_357G1_scaffold_416_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18507..21170)
DNA (2664bp) protein (888aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J994_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78896.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Signal transduction histidine kinase
L3_105_357G1_scaffold_416_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21564..22256)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J995_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78897.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_105_357G1_scaffold_416_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22353..23072
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J996_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78898.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_105_357G1_scaffold_416_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23087..24685
DNA (1599bp) protein (533aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hydroxylamine reductase (EC:1.7.-.-)
Hydroxylamine reductase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J997_9FIRM
L3_105_357G1_scaffold_416_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24753..25640)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J998_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78900.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
AraC-type DNA-binding domain-containing proteins
L3_105_357G1_scaffold_416_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25806..27032
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J999_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78901.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Major Facilitator Superfamily.
L3_105_357G1_scaffold_416_20
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27141..28106)
DNA (966bp) protein (322aa)
Sulfite reductase, subunit C {ECO:0000313|EMBL:EDM88612.1}; EC=1.8.-.- {ECO:0000313|EMBL:EDM88612.1};; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
asrC; sulfite reductase subunit C (EC:1.8.-.-)
Sulfite reductase, subunit C n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZP16_9FIRM
L3_105_357G1_scaffold_416_21
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28120..28908)
DNA (789bp) protein (263aa)
Sulfite reductase, subunit B {ECO:0000313|EMBL:EDM88613.1}; EC=1.8.-.- {ECO:0000313|EMBL:EDM88613.1};; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Sulfite reductase, subunit B n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZP17_9FIRM
asrB; anaerobic sulfite reductase subunit B
L3_105_357G1_scaffold_416_22
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28910..29908)
DNA (999bp) protein (333aa)
Sulfite reductase, subunit A {ECO:0000313|EMBL:EDM88614.1}; EC=1.8.-.- {ECO:0000313|EMBL:EDM88614.1};; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Sulfite reductase, subunit A n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZP18_9FIRM
asrA; anaerobic sulfite reductase subunit A
L3_105_357G1_scaffold_416_23
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29929..30618)
DNA (690bp) protein (230aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZP19_9FIRM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EDM88615.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
CRP/FNR family transcriptional regulator
L3_105_357G1_scaffold_416_24
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

comp(30935..31183)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XRV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA15244.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
hypothetical protein
L3_105_357G1_scaffold_416_25
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31164..31475)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:252 RepID=R6K5N4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB68775.1}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
hypothetical protein
L3_105_357G1_scaffold_416_26
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31468..31662)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:252 RepID=R6K5N4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB68775.1}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
hypothetical protein
L3_105_357G1_scaffold_416_27
unknown

Not on your lists

comp(31681..31830)
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying 27 items

View Taxonomy