ggKbase home page

L3_105_357G1_scaffold_356

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_357G1_scaffold_356_1
Bacteroides coprophilus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2..568
DNA (567bp) protein (189aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=547042 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprophilus DSM 18228 = JCM 13818.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=3 Tax=Bacteroides RepID=B5D1F4_BACPM
glyceraldehyde 3-phosphate dehydrogenase
L3_105_357G1_scaffold_356_2
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

692..1603
DNA (912bp) protein (304aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
tRNA dimethylallyltransferase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D1F3_BACPM
tRNA dimethylallyltransferase
L3_105_357G1_scaffold_356_3
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1610..2542
DNA (933bp) protein (311aa)
Lipid kinase, YegS/Rv2252/BmrU family {ECO:0000313|EMBL:EDY94395.1}; EC=2.7.1.- {ECO:0000313|EMBL:EDY94395.1};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
Lipid kinase, YegS/Rv2252/BmrU family n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D1F2_BACPM
hypothetical protein
L3_105_357G1_scaffold_356_4
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2544..3347
DNA (804bp) protein (268aa)
3-deoxy-8-phosphooctulonate synthase {ECO:0000313|EMBL:EDY94394.1}; EC=2.5.1.55 {ECO:0000313|EMBL:EDY94394.1};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
3-deoxy-8-phosphooctulonate synthase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D1F1_BACPM
L3_105_357G1_scaffold_356_5
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3351..4568
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D1F0_BACPM
Uncharacterized protein {ECO:0000313|EMBL:EDY94393.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
hypothetical protein
L3_105_357G1_scaffold_356_6
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4671..5945
DNA (1275bp) protein (425aa)
Serine--tRNA ligase {ECO:0000313|EMBL:EDY94392.1}; EC=6.1.1.11 {ECO:0000313|EMBL:EDY94392.1};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D1E9_BACPM
L3_105_357G1_scaffold_356_7
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6223..8160
DNA (1938bp) protein (646aa)
Putative glycogen debranching enzyme, archaeal type n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D1E8_BACPM
Putative glycogen debranching enzyme, archaeal type {ECO:0000313|EMBL:EDY94391.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
amylo-alpha-16-glucosidase
L3_105_357G1_scaffold_356_8
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8176..9447
DNA (1272bp) protein (424aa)
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:EDY94390.1}; EC=2.4.-.- {ECO:0000313|EMBL:EDY94390.1};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
Glycosyltransferase, group 1 family protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D1E7_BACPM
group 1 glycosyl transferase
L3_105_357G1_scaffold_356_9
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9462..10832
DNA (1371bp) protein (457aa)
Alpha-amylase (EC:3.2.1.1)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VXD2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ88226.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
L3_105_357G1_scaffold_356_10
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10900..12372)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0V7_BACPM
Uncharacterized protein {ECO:0000313|EMBL:EDY94797.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
hypothetical protein
L3_105_357G1_scaffold_356_11
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12401..13216)
DNA (816bp) protein (272aa)
Starch synthase catalytic domain protein n=2 Tax=Bacteroides RepID=B5D0V8_BACPM
Uncharacterized protein {ECO:0000313|EMBL:CCZ88228.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
starch synthase catalytic domain-containing protein
L3_105_357G1_scaffold_356_12
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13474..14319
DNA (846bp) protein (282aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
pantothenate synthetase (EC:6.3.2.1)
Pantothenate synthetase n=2 Tax=Bacteroides RepID=B5D0V9_BACPM
L3_105_357G1_scaffold_356_13
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14326..14676
DNA (351bp) protein (117aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0W0_BACPM
L3_105_357G1_scaffold_356_14
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14906..16270)
DNA (1365bp) protein (455aa)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
pyridoxal-phosphate dependent TrpB-like protein (EC:4.2.1.20)
Pyridoxal-phosphate dependent TrpB-like enzyme n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0W1_BACPM
L3_105_357G1_scaffold_356_15
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16286..16444)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0W2_BACPM
Uncharacterized protein {ECO:0000313|EMBL:EDY94802.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
L3_105_357G1_scaffold_356_16
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16500..18284
DNA (1785bp) protein (595aa)
Cation transport protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0W3_BACPM
Cation transport protein {ECO:0000313|EMBL:EDY94803.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
potassium transporter
L3_105_357G1_scaffold_356_17
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18288..18977
DNA (690bp) protein (230aa)
TrkA N-terminal domain protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0W4_BACPM
TrkA N-terminal domain protein {ECO:0000313|EMBL:EDY94804.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
K+ uptake system protein
L3_105_357G1_scaffold_356_18
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18986..20011)
DNA (1026bp) protein (342aa)
YceG family protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0W5_BACPM
YceG family protein {ECO:0000313|EMBL:EDY94805.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
aminodeoxychorismate lyase
L3_105_357G1_scaffold_356_19
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20221..21759
DNA (1539bp) protein (513aa)
Alpha-L-arabinofuranosidase domain protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0W7_BACPM
Alpha-L-arabinofuranosidase domain protein {ECO:0000313|EMBL:EDY94807.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
alpha-N-arabinofuranosidase
L3_105_357G1_scaffold_356_20
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21932..22999
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VK87_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ88239.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
hypothetical protein
L3_105_357G1_scaffold_356_21
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23047..24105
DNA (1059bp) protein (353aa)
Phosphate-binding protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0W9_BACPM
Phosphate-binding protein {ECO:0000256|PIRNR:PIRNR002756}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
phosphate ABC transporter, periplasmic phosphate-binding protein
L3_105_357G1_scaffold_356_22
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24121..24978
DNA (858bp) protein (286aa)
Phosphate ABC transporter, permease protein PstC n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0X0_BACPM
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:EDY94810.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
phosphate ABC transporter, inner membrane subunit PstC
L3_105_357G1_scaffold_356_23
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25001..25870
DNA (870bp) protein (290aa)
Phosphate ABC transporter, permease protein PstA n=2 Tax=Bacteroides RepID=B5D0X1_BACPM
Uncharacterized protein {ECO:0000313|EMBL:CCZ88242.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
phosphate ABC transporter, inner membrane subunit PstA
L3_105_357G1_scaffold_356_24
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25858..26628
DNA (771bp) protein (257aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
phosphate ABC transporter, ATPase subunit (EC:3.6.3.27)
Uncharacterized protein n=2 Tax=Bacteroides RepID=R5VCA6_9BACE
L3_105_357G1_scaffold_356_25
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26711..27658)
DNA (948bp) protein (316aa)
Kinase, PfkB family n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0X3_BACPM
Kinase, PfkB family {ECO:0000313|EMBL:EDY94813.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
ribokinase
L3_105_357G1_scaffold_356_26
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27879..29186
DNA (1308bp) protein (436aa)
Inositol-3-phosphate synthase (EC:5.5.1.4)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VD13_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ88245.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
L3_105_357G1_scaffold_356_27
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29389..32037
DNA (2649bp) protein (883aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0X6_BACPM
Uncharacterized protein {ECO:0000313|EMBL:EDY94816.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
outer membrane protein
L3_105_357G1_scaffold_356_28
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32111..33430
DNA (1320bp) protein (440aa)
Sigma-54 interaction domain protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D0X7_BACPM
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EDY94817.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
Fis family sigma-54 specific transcriptional regulator
L3_105_357G1_scaffold_356_29
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33417..33950
DNA (534bp) protein (178aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=B5D0X8_BACPM
Uncharacterized protein {ECO:0000313|EMBL:CCZ88248.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
hypothetical protein
L3_105_357G1_scaffold_356_30
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33962..34747
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VK97_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ88249.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
hypothetical protein
Displaying items 1-30 of 32 in total

View Taxonomy