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L3_105_357G1_scaffold_613

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_357G1_scaffold_613_1
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(320..799)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUY8_BACPM
Uncharacterized protein {ECO:0000313|EMBL:EDY97004.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
hypothetical protein
L3_105_357G1_scaffold_613_2
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(789..1298)
DNA (510bp) protein (170aa)
RNA polymerase sigma-70 factor n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUY7_BACPM
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EDY97003.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
ECF subfamily RNA polymerase sigma-24 subunit
L3_105_357G1_scaffold_613_3
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1362..2135)
DNA (774bp) protein (258aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
Acetylglutamate kinase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUY6_BACPM
acetylglutamate kinase
L3_105_357G1_scaffold_613_4
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2153..4045)
DNA (1893bp) protein (631aa)
Biosynthetic arginine decarboxylase {ECO:0000256|HAMAP-Rule:MF_01417}; Short=ADC {ECO:0000256|HAMAP-Rule:MF_01417};; EC=4.1.1.19 {ECO:0000256|HAMAP-Rule:MF_01417, ECO:0000256|SAAS:SAAS00212226};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
biosynthetic arginine decarboxylase (EC:4.1.1.19)
Biosynthetic arginine decarboxylase n=2 Tax=Bacteroides RepID=B5CUY5_BACPM
L3_105_357G1_scaffold_613_5
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4077..4601)
DNA (525bp) protein (175aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUY4_BACPM
L3_105_357G1_scaffold_613_6
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4598..6931)
DNA (2334bp) protein (778aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUY3_BACPM
L3_105_357G1_scaffold_613_7
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7057..7467
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUY2_BACPM
Uncharacterized protein {ECO:0000313|EMBL:EDY96998.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
hypothetical protein
L3_105_357G1_scaffold_613_8
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7922..9313
DNA (1392bp) protein (464aa)
PTS system Galactitol-specific IIC component n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUY0_BACPM
PTS system Galactitol-specific IIC component {ECO:0000313|EMBL:EDY96996.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
DNA mismatch repair protein MutT
L3_105_357G1_scaffold_613_9
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9338..10258
DNA (921bp) protein (307aa)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; EC=5.3.1.17 {ECO:0000256|HAMAP-Rule:MF_00687};; 5-keto-4-deoxyuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; DKI isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
5-keto-4-deoxyuronate isomerase (EC:5.3.1.17)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase n=2 Tax=Bacteroides RepID=B5CUX9_BACPM
L3_105_357G1_scaffold_613_10
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10478..11935
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VG92_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86929.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
hexuronate transporter
L3_105_357G1_scaffold_613_11
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12033..14900
DNA (2868bp) protein (956aa)
Glycosyl hydrolase family 2, sugar binding domain protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUX7_BACPM
Glycosyl hydrolase family 2, sugar binding domain protein {ECO:0000313|EMBL:EDY96993.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
beta-glycosidase
L3_105_357G1_scaffold_613_12
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14958..17015)
DNA (2058bp) protein (686aa)
7TM receptor with intracellular HD hydrolase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUX6_BACPM
7TM receptor with intracellular HD hydrolase {ECO:0000313|EMBL:EDY96992.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
7TM receptor with intracellular metal dependent phosphohydrolase
L3_105_357G1_scaffold_613_13
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17101..18618
DNA (1518bp) protein (506aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUX5_BACPM
L3_105_357G1_scaffold_613_14
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18627..19847
DNA (1221bp) protein (407aa)
3-deoxy-D-manno-octulosonic-acid transferase n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUX4_BACPM
3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:EDY96990.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
glycosyl transferase family protein
L3_105_357G1_scaffold_613_15
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19937..20317)
DNA (381bp) protein (127aa)
Transcriptional regulator, GntR family n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUX3_BACPM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EDY96989.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
GntR family transcriptional regulator
L3_105_357G1_scaffold_613_16
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20314..21192)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUX2_BACPM
Uncharacterized protein {ECO:0000313|EMBL:EDY96988.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
hypothetical protein
L3_105_357G1_scaffold_613_17
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21206..22057)
DNA (852bp) protein (284aa)
ABC transporter, ATP-binding protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUX1_BACPM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDY96987.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
ABC transporter ATP-binding protein
L3_105_357G1_scaffold_613_18
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22179..22361)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CUX0_BACPM
Uncharacterized protein {ECO:0000313|EMBL:EDY96986.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
Displaying 18 items

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