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L3_106_000M1_scaffold_85

Search features with annotation key words

Displaying items 1-30 of 164 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_85_1
unknown

Not on your lists

comp(163..336)
DNA (174bp) protein (58aa)

This feature has no annotations

L3_106_000M1_scaffold_85_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(353..715)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84115.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_106_000M1_scaffold_85_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(741..1289)
DNA (549bp) protein (183aa)
Uncharacterized conserved protein n=2 Tax=Ruminococcus RepID=D4L619_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL15064.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_106_000M1_scaffold_85_4
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1560..2462)
DNA (903bp) protein (301aa)
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84119.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_106_000M1_scaffold_85_5
unknown

Not on your lists

2711..2836
DNA (126bp) protein (42aa)

This feature has no annotations

L3_106_000M1_scaffold_85_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2959..4698
DNA (1740bp) protein (580aa)
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV58_9FIRM
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain {ECO:0000313|EMBL:CCX84120.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L3_106_000M1_scaffold_85_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4903..5700)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7L5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84121.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_106_000M1_scaffold_85_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5844..7187)
DNA (1344bp) protein (448aa)
Uncharacterized protein conserved in bacteria n=4 Tax=root RepID=D4L616_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCX84122.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_106_000M1_scaffold_85_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7187..10090)
DNA (2904bp) protein (968aa)
Putative CoA-substrate-specific enzyme activase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVF5_9FIRM
Putative CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:CCX84123.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_106_000M1_scaffold_85_10

Not on your lists

comp(10376..11029)
DNA (654bp) protein (218aa)
Uncharacterized protein n=2 Tax=root RepID=R5DZ03_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKC61686.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_106_000M1_scaffold_85_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11174..11872
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L614_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15059.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_106_000M1_scaffold_85_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12171..13175)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E7M0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15058.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_106_000M1_scaffold_85_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13197..13889)
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E5T5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCX84127.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_106_000M1_scaffold_85_14
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14220..15188)
DNA (969bp) protein (323aa)
Abi-like protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R656_9FIRM
Abi-like protein {ECO:0000313|EMBL:CDC43450.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Abi family protein
L3_106_000M1_scaffold_85_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15414..15608)
DNA (195bp) protein (65aa)
Predicted transcriptional regulators n=2 Tax=Ruminococcus RepID=D4L611_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CCX84128.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_106_000M1_scaffold_85_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15605..16126)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV66_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84130.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_106_000M1_scaffold_85_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16422..16619)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E5T9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84132.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_106_000M1_scaffold_85_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17931..18539
DNA (609bp) protein (203aa)
Ribosome maturation factor RimP n=2 Tax=Ruminococcus RepID=D4L606_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_106_000M1_scaffold_85_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18625..19785
DNA (1161bp) protein (387aa)
Transcription termination factor NusA n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7M8_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
transcription termination factor NusA
L3_106_000M1_scaffold_85_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19810..20118
DNA (309bp) protein (103aa)
Predicted nucleic-acid-binding protein implicated in transcription termination n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L604_9FIRM
Predicted nucleic-acid-binding protein implicated in transcription termination
Predicted nucleic-acid-binding protein implicated in transcription termination {ECO:0000313|EMBL:CBL15049.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_106_000M1_scaffold_85_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20134..20466
DNA (333bp) protein (111aa)
Ribosomal protein HS6-type (S12/L30/L7a) n=2 Tax=Ruminococcus RepID=D4L603_9FIRM
Ribosomal protein HS6-type (S12/L30/L7a)
Ribosomal protein HS6-type (S12/L30/L7a) {ECO:0000313|EMBL:CBL15048.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_106_000M1_scaffold_85_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20453..22825
DNA (2373bp) protein (791aa)
Translation initiation factor IF-2 n=2 Tax=root RepID=R5DZ13_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
bacterial translation initiation factor 2 (bIF-2)
L3_106_000M1_scaffold_85_23
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23116..23493
DNA (378bp) protein (126aa)
Ribosome-binding factor A n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L601_9FIRM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000313|EMBL:CBL15046.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_106_000M1_scaffold_85_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23477..24418
DNA (942bp) protein (314aa)
Exopolyphosphatase-related proteins n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV79_9FIRM
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CCX84145.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Exopolyphosphatase-related proteins
L3_106_000M1_scaffold_85_25
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24415..25329
DNA (915bp) protein (305aa)
tRNA pseudouridine 55 synthase (EC:5.4.99.12)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
tRNA pseudouridine synthase B n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Z9_9FIRM
L3_106_000M1_scaffold_85_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25796..26467
DNA (672bp) protein (224aa)
ABC-type antimicrobial peptide transport system, ATPase component (EC:3.6.3.-)
ABC-type antimicrobial peptide transport system ATPase component n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DZ21_9FIRM
ABC-type antimicrobial peptide transport system ATPase component {ECO:0000313|EMBL:CCX84149.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_106_000M1_scaffold_85_27
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26470..29124
DNA (2655bp) protein (885aa)
ABC-type transport system, involved in lipoprotein release, permease component n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Z7_9FIRM
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:CBL15042.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
ABC-type transport system, involved in lipoprotein release, permease component
L3_106_000M1_scaffold_85_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29295..29942
DNA (648bp) protein (216aa)
Two component transcriptional regulator winged helix family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVH8_9FIRM
Two component transcriptional regulator winged helix family {ECO:0000313|EMBL:CCX84153.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
winged helix family two component transcriptional regulator
L3_106_000M1_scaffold_85_29
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29942..31156
DNA (1215bp) protein (405aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Signal transduction histidine kinase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Z6_9FIRM
Signal transduction histidine kinase
L3_106_000M1_scaffold_85_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31461..35513
DNA (4053bp) protein (1351aa)
Glycosidases n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7P5_9FIRM
Glycosidases {ECO:0000313|EMBL:CCX84156.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Glycosidases
Displaying items 1-30 of 164 in total

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