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L3_106_000M1_scaffold_173

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Displaying items 1-30 of 135 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_173_1
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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175..1533
DNA (1359bp) protein (453aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJG3_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EDM62208.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_106_000M1_scaffold_173_2
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1659..2990
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJG2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM62207.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_106_000M1_scaffold_173_3
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3000..4208
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM62205.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_106_000M1_scaffold_173_4
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4163..4393
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM62205.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_106_000M1_scaffold_173_5
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4604..5665
DNA (1062bp) protein (354aa)
Protein RecA n=1 Tax=Dorea longicatena CAG:42 RepID=R7G3G4_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
protein RecA
L3_106_000M1_scaffold_173_6
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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5669..6277
DNA (609bp) protein (203aa)
Regulatory protein RecX n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJF7_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_106_000M1_scaffold_173_7
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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6361..7914
DNA (1554bp) protein (518aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Ribonuclease Y n=1 Tax=Dorea longicatena CAG:42 RepID=R7G0U9_9FIRM
metal dependent phosphohydrolase
L3_106_000M1_scaffold_173_8
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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8114..8656
DNA (543bp) protein (181aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
Hydrolase, NUDIX family n=2 Tax=Dorea RepID=A6BJF3_9FIRM
Hydrolase NUDIX family {ECO:0000313|EMBL:CDE20562.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_106_000M1_scaffold_173_9
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8721..9260
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Dorea RepID=R7G1A4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE20563.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
stage II sporulation protein M
L3_106_000M1_scaffold_173_10
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9362..10687)
DNA (1326bp) protein (442aa)
Polysaccharide biosynthesis protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJF0_9FIRM
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EDM62195.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L3_106_000M1_scaffold_173_11
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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10824..11288
DNA (465bp) protein (155aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Dorea RepID=A6BJE9_9FIRM
Transcriptional regulator Rrf2 family {ECO:0000313|EMBL:CDE20565.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
transcriptional regulator, BadM/Rrf2 family
L3_106_000M1_scaffold_173_12
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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11355..12551
DNA (1197bp) protein (399aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Dorea longicatena CAG:42 RepID=R7G0V4_9FIRM
L3_106_000M1_scaffold_173_13
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12629..13072
DNA (444bp) protein (148aa)
Fe-S iron-sulfur cluster assembly protein, NifU family n=2 Tax=Dorea RepID=A6BJE6_9FIRM
Fe-S iron-sulfur cluster assembly protein NifU family {ECO:0000313|EMBL:CDE20567.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_106_000M1_scaffold_173_14
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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13088..14173
DNA (1086bp) protein (362aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Dorea RepID=R7G1A9_9FIRM
L3_106_000M1_scaffold_173_15
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14221..15057
DNA (837bp) protein (279aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJE3_9FIRM
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:EDM62188.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_106_000M1_scaffold_173_16
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15208..16221
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=2 Tax=Dorea RepID=A6BJE2_9FIRM
L3_106_000M1_scaffold_173_17
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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16314..17507
DNA (1194bp) protein (398aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
3-phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=2 Tax=Dorea RepID=A6BJE1_9FIRM
L3_106_000M1_scaffold_173_18
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17527..18276
DNA (750bp) protein (250aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=2 Tax=Dorea RepID=A6BJE0_9FIRM
L3_106_000M1_scaffold_173_19
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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18372..19910
DNA (1539bp) protein (513aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJD9_9FIRM
L3_106_000M1_scaffold_173_20
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20039..20725
DNA (687bp) protein (229aa)
Response regulator receiver domain protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G2N4_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDE21196.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_106_000M1_scaffold_173_21
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20722..21741
DNA (1020bp) protein (340aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G170_9FIRM
Signal transduction histidine kinase
L3_106_000M1_scaffold_173_22
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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21838..22677
DNA (840bp) protein (280aa)
ABC transporter, ATP-binding protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJD6_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDM62181.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_106_000M1_scaffold_173_23
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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22667..24733
DNA (2067bp) protein (689aa)
Putative phage tail component domain protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G589_9FIRM
Putative phage tail component domain protein {ECO:0000313|EMBL:CDE21192.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
ABC-type transport system, permeaseTn916-like,CTn1-Orf8
L3_106_000M1_scaffold_173_24
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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24702..25448
DNA (747bp) protein (249aa)
Protein TraX n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJD4_9FIRM
Protein TraX {ECO:0000313|EMBL:EDM62179.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
TraX protein.
L3_106_000M1_scaffold_173_25
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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25542..26213
DNA (672bp) protein (224aa)
putative phosphatase (EC:3.1.3.18)
HAD hydrolase, family IA, variant 1 n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJD3_9FIRM
HAD hydrolase, family IA, variant 1 {ECO:0000313|EMBL:EDM62178.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_106_000M1_scaffold_173_26
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26345..26866
DNA (522bp) protein (174aa)
acetolactate synthase, small subunit (EC:2.2.1.6)
Acetolactate synthase small subunit n=1 Tax=Dorea longicatena CAG:42 RepID=R7G163_9FIRM
Acetolactate synthase small subunit {ECO:0000313|EMBL:CDE21189.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_106_000M1_scaffold_173_27
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26995..28014
DNA (1020bp) protein (340aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Dorea longicatena CAG:42 RepID=R7G383_9FIRM
L3_106_000M1_scaffold_173_28
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(28338..28601)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Dorea longicatena CAG:42 RepID=R7G584_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
30S ribosomal protein S20
L3_106_000M1_scaffold_173_29
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28786..29778
DNA (993bp) protein (331aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
GPR endopeptidase (EC:3.4.24.78)
Germination protease n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BJC9_9FIRM
L3_106_000M1_scaffold_173_30
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29855..31090
DNA (1236bp) protein (412aa)
Stage II sporulation protein P n=1 Tax=Dorea longicatena CAG:42 RepID=R7G217_9FIRM
Stage II sporulation protein P {ECO:0000313|EMBL:CDE21185.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Stage II sporulation protein P (SpoIIP).
Displaying items 1-30 of 135 in total

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