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L3_106_000M1_scaffold_200

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_200_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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83..589
DNA (507bp) protein (169aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AV52_9FIRM
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:CDA54905.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_200_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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992..6562
DNA (5571bp) protein (1857aa)
Alpha amylase, catalytic domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFQ6_9FIRM
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EEU99350.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Glycosidases
L3_106_000M1_scaffold_200_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7063..8394
DNA (1332bp) protein (444aa)
aspartyl-tRNA synthetase, archaeal type (EC:6.1.1.23)
Aspartate--tRNA ligase n=2 Tax=Roseburia RepID=C7GFQ3_9FIRM
Aspartate--tRNA ligase {ECO:0000313|EMBL:CDA54902.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_200_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8466..9380
DNA (915bp) protein (305aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AV46_9FIRM
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000313|EMBL:CDA54900.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
glutamyl-tRNA(Gln) amidotransferase subunit C
L3_106_000M1_scaffold_200_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9449..10918
DNA (1470bp) protein (490aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.6 6.3.5.- 6.3.5.7)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120, ECO:0000313|EMBL:CBL14119.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3C9_9FIRM
L3_106_000M1_scaffold_200_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10940..12370
DNA (1431bp) protein (477aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.6 6.3.5.7 6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=2 Tax=Roseburia intestinalis RepID=D4L3D0_9FIRM
L3_106_000M1_scaffold_200_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12721..13236
DNA (516bp) protein (172aa)
Predicted HD superfamily hydrolase n=2 Tax=Roseburia intestinalis RepID=D4KSB0_9FIRM
Predicted HD superfamily hydrolase
Predicted HD superfamily hydrolase {ECO:0000313|EMBL:CBL09762.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_106_000M1_scaffold_200_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13325..15253)
DNA (1929bp) protein (643aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSA9_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL09761.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
ABC-type multidrug transport system, ATPase and permease components
L3_106_000M1_scaffold_200_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15253..17001)
DNA (1749bp) protein (583aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3D3_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL14123.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
ABC-type multidrug transport system, ATPase and permease components
L3_106_000M1_scaffold_200_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17125..17628
DNA (504bp) protein (168aa)
Transcriptional regulator, MarR family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFP6_9FIRM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEU99340.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Transcriptional regulators
L3_106_000M1_scaffold_200_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17879..20068
DNA (2190bp) protein (730aa)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CBL09758.1}; EC=1.17.4.2 {ECO:0000313|EMBL:CBL09758.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Anaerobic ribonucleoside-triphosphate reductase n=2 Tax=Roseburia intestinalis RepID=D4KSA6_9FIRM
L3_106_000M1_scaffold_200_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20180..20569
DNA (390bp) protein (130aa)
Thioesterase superfamily n=4 Tax=Roseburia RepID=D4KSA5_9FIRM
Thioesterase superfamily
Thioesterase superfamily {ECO:0000313|EMBL:CDA57312.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_200_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20579..21355
DNA (777bp) protein (259aa)
Predicted divalent heavy-metal cations transporter n=3 Tax=Roseburia RepID=D4L3D7_9FIRM
Predicted divalent heavy-metal cations transporter {ECO:0000313|EMBL:CDA57311.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted divalent heavy-metal cations transporter
L3_106_000M1_scaffold_200_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21370..21720
DNA (351bp) protein (117aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GFP1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57310.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_200_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21732..22502
DNA (771bp) protein (257aa)
Uncharacterized conserved protein n=4 Tax=Roseburia RepID=D4KSA3_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CDA57309.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_200_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22566..23216
DNA (651bp) protein (217aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GFN9_9FIRM
RNAse H family protein {ECO:0000313|EMBL:CDA57308.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
RNAse H family protein
L3_106_000M1_scaffold_200_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23240..24343
DNA (1104bp) protein (368aa)
Transcriptional regulator, GntR family n=5 Tax=Roseburia RepID=D4KSA1_9FIRM
transcriptional regulator, GntR family
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDA57307.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_200_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24347..24865
DNA (519bp) protein (173aa)
anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=2 Tax=Roseburia intestinalis RepID=D4KSA0_9FIRM
L3_106_000M1_scaffold_200_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24976..25224
DNA (249bp) protein (83aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6B2D1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57305.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_200_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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25254..26327
DNA (1074bp) protein (358aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3E4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14134.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_106_000M1_scaffold_200_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26392..26523)
DNA (132bp) protein (44aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GGN5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57303.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_200_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26804..27559
DNA (756bp) protein (252aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3E6_9FIRM
N-acetylmuramoyl-L-alanine amidase
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CBL14136.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_106_000M1_scaffold_200_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27593..29089
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99027.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Putative RNA methylase family UPF0020.
L3_106_000M1_scaffold_200_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29096..31747
DNA (2652bp) protein (884aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGN1_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEU99026.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
diguanylate cyclase (GGDEF) domain
L3_106_000M1_scaffold_200_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32266..33447
DNA (1182bp) protein (394aa)
Fibronectin type III domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS93_9FIRM
Fibronectin type III domain.
Fibronectin type III domain {ECO:0000313|EMBL:CBL09745.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_106_000M1_scaffold_200_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33564..34544
DNA (981bp) protein (327aa)
Guanosine polyphosphate pyrophosphohydrolases/synthetases n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS92_9FIRM
Guanosine polyphosphate pyrophosphohydrolases/synthetases
Guanosine polyphosphate pyrophosphohydrolases/synthetases {ECO:0000313|EMBL:CBL09744.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_106_000M1_scaffold_200_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34676..35689
DNA (1014bp) protein (338aa)
deoxyguanosinetriphosphate triphosphohydrolase, putative (EC:3.1.5.1)
Deoxyguanosinetriphosphate triphosphohydrolase, putative n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3E9_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_106_000M1_scaffold_200_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35761..37593
DNA (1833bp) protein (611aa)
DNA primase (EC:2.7.7.-)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
DNA primase n=3 Tax=Roseburia RepID=D4L3F0_9FIRM
L3_106_000M1_scaffold_200_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37631..38824
DNA (1194bp) protein (398aa)
RNA polymerase sigma factor SigA n=3 Tax=Roseburia RepID=D4KS89_9FIRM
RNA polymerase, sigma 70 subunit, RpoD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_106_000M1_scaffold_200_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38826..39584
DNA (759bp) protein (253aa)
Predicted SAM-dependent methyltransferase n=3 Tax=Roseburia RepID=D4KS88_9FIRM
Predicted SAM-dependent methyltransferase
Predicted SAM-dependent methyltransferase {ECO:0000313|EMBL:CBL14142.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Displaying items 1-30 of 109 in total

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