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L3_106_000M1_scaffold_213

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_213_1
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2..133
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis CL09T03C24 RepID=K6B1Y6_9PORP
hemolysin secretion transport system membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EFK60446.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
L3_106_000M1_scaffold_213_2
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

276..1733
DNA (1458bp) protein (486aa)
RNA polymerase sigma-54 n=9 Tax=Bacteroidales RepID=A6LGR1_PARD8
RNA polymerase sigma-54
RNA polymerase sigma-54 factor {ECO:0000313|EMBL:KDS68548.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_106_000M1_scaffold_213_3
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1740..2360
DNA (621bp) protein (207aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=C7X4I8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KEJ84759.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
hypothetical protein
L3_106_000M1_scaffold_213_4
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2377..2757
DNA (381bp) protein (127aa)
Glycine cleavage system H protein n=3 Tax=Parabacteroides RepID=C7X4I7_9PORP
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
glycine cleavage system protein H
L3_106_000M1_scaffold_213_5
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2760..3266
DNA (507bp) protein (169aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
N5-carboxyaminoimidazole ribonucleotide mutase n=9 Tax=Bacteroidales RepID=A6LGR4_PARD8
phosphoribosylaminoimidazole carboxylase catalytic subunit PurE
L3_106_000M1_scaffold_213_6
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3373..5208
DNA (1836bp) protein (612aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=4 Tax=Parabacteroides RepID=ISPG_PARD8
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
L3_106_000M1_scaffold_213_7
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5258..5551
DNA (294bp) protein (98aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=E1Z1G5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EFK60440.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
L3_106_000M1_scaffold_213_8
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5542..5862
DNA (321bp) protein (107aa)
Plasmid stabilization system protein, RelE/ParE family n=2 Tax=Parabacteroides RepID=E1Z1G4_9PORP
Plasmid stabilization system protein, RelE/ParE family {ECO:0000313|EMBL:EFK60439.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
L3_106_000M1_scaffold_213_9
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5866..6300
DNA (435bp) protein (145aa)
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=9 Tax=Bacteroidales RepID=A6LGR6_PARD8
L3_106_000M1_scaffold_213_10
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6329..8047
DNA (1719bp) protein (573aa)
Uncharacterized protein n=6 Tax=Bacteroidales RepID=A6LGR7_PARD8
hypothetical protein
TPR domain protein {ECO:0000313|EMBL:EFI10180.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
L3_106_000M1_scaffold_213_11
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8044..8889
DNA (846bp) protein (282aa)
Uncharacterized protein n=9 Tax=Bacteroidales RepID=A6LGR8_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFK60436.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
L3_106_000M1_scaffold_213_12
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8896..10215
DNA (1320bp) protein (440aa)
Peptidase M23/M37 family putative n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6IYH3_9PORP
Peptidase M23/M37 family putative {ECO:0000313|EMBL:CDB50436.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
M24/M37 family peptidase
L3_106_000M1_scaffold_213_13
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10334..11188)
DNA (855bp) protein (285aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=C7X4I0_9PORP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDS68584.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_106_000M1_scaffold_213_14
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11270..12898)
DNA (1629bp) protein (543aa)
Sugar phosphate isomerase/epimerase n=2 Tax=Bacteroidales RepID=D7ILF7_9BACE
Tat (Twin-arginine translocation) pathway signal sequence {ECO:0000313|EMBL:EKN31635.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
glycoside hydrolase
L3_106_000M1_scaffold_213_15
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13102..14250)
DNA (1149bp) protein (383aa)
Alkaline phosphatase n=6 Tax=Bacteroidales RepID=A6LGS2_PARD8
alkaline phosphatase
Alkaline phosphatase family protein {ECO:0000313|EMBL:EEY83734.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
L3_106_000M1_scaffold_213_16
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14272..17145)
DNA (2874bp) protein (958aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZW54_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN31207.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
glycoside hydrolase
L3_106_000M1_scaffold_213_17
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17306..18937)
DNA (1632bp) protein (544aa)
SusD family protein n=2 Tax=Parabacteroides RepID=E1Z1F5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN31206.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
hypothetical protein
L3_106_000M1_scaffold_213_18
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18979..22227)
DNA (3249bp) protein (1083aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Parabacteroides RepID=E1Z1F4_9PORP
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EFK60429.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
hypothetical protein
L3_106_000M1_scaffold_213_19
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22413..23816)
DNA (1404bp) protein (468aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
glucuronate isomerase (EC:5.3.1.12)
Uronate isomerase n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7ILG2_9BACE
L3_106_000M1_scaffold_213_20
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23813..24487)
DNA (675bp) protein (225aa)
keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase (EC:4.1.2.14 4.1.3.16)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=3 Tax=Parabacteroides RepID=K5ZXA7_9PORP
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:EKN31642.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
L3_106_000M1_scaffold_213_21
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24524..25567)
DNA (1044bp) protein (348aa)
KHG/KDPG family aldolase/carbohydrate kinase, PfkB family n=3 Tax=Bacteroidales RepID=D7ILG4_9BACE
KHG/KDPG family aldolase/carbohydrate kinase PfkB family {ECO:0000313|EMBL:CDB50427.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
gluconate kinase
L3_106_000M1_scaffold_213_22
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26158..27147)
DNA (990bp) protein (330aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
tRNA-dihydrouridine synthase n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TEK2_9BACE
TIM-barrel enzyme
L3_106_000M1_scaffold_213_23
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27427..28665
DNA (1239bp) protein (413aa)
Collagenase {ECO:0000313|EMBL:EEU52717.1}; EC=3.4.-.- {ECO:0000313|EMBL:EEU52717.1};; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
Collagenase n=2 Tax=Bacteroidales RepID=C7X497_9PORP
collagenase
L3_106_000M1_scaffold_213_24
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28686..29099
DNA (414bp) protein (138aa)
Acyl-CoA thioester hydrolase, YbgC/YbaW family n=9 Tax=Bacteroidales RepID=C7X496_9PORP
thioesterase
Acyl-CoA thioester hydrolase, YbgC/YbaW family {ECO:0000313|EMBL:EEY83725.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
L3_106_000M1_scaffold_213_25
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29100..30218
DNA (1119bp) protein (373aa)
Putative DNA processing Smf-like protein n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6JK71_9PORP
Putative DNA processing Smf-like protein {ECO:0000313|EMBL:CDB50422.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
DNA processing Smf-like protein
L3_106_000M1_scaffold_213_26
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30701..31717)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=5 Tax=Bacteroidales RepID=A6LGT6_PARD8
hypothetical protein
Peptidase, S41 family {ECO:0000313|EMBL:EEY83723.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
L3_106_000M1_scaffold_213_27
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31729..32598)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6IM87_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDB50420.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
hypothetical protein
L3_106_000M1_scaffold_213_28
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32602..35337)
DNA (2736bp) protein (912aa)
DNA gyrase/topoisomerase IV, A subunit n=1 Tax=Parabacteroides sp. D13 RepID=C7X492_9PORP
DNA gyrase/topoisomerase IV, A subunit {ECO:0000313|EMBL:EEU52712.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
DNA topoisomerase IV subunit A
L3_106_000M1_scaffold_213_29
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35556..36323
DNA (768bp) protein (256aa)
Uncharacterized protein n=5 Tax=Bacteroidales RepID=A6LGT9_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR44903.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L3_106_000M1_scaffold_213_30
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36445..37245
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K6BTX5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN31653.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
hypothetical protein
Displaying items 1-30 of 100 in total

View Taxonomy