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L3_106_000M1_scaffold_219

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_219_1
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..1979)
DNA (1977bp) protein (659aa)
ATP-dependent helicase II n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NE84_9BIFI
ATP-dependent helicase II {ECO:0000313|EMBL:CCY95482.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
ATP-dependent helicase
L3_106_000M1_scaffold_219_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1995..2984)
DNA (990bp) protein (330aa)
Ribokinase n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8APU5_BIFLN
sugar kinase
Sugar kinase {ECO:0000313|EMBL:AIW43866.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_106_000M1_scaffold_219_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3031..4257)
DNA (1227bp) protein (409aa)
Fucose permease n=7 Tax=Bifidobacterium RepID=B3DRA1_BIFLD
fucP3; fucp3
MFS transporter {ECO:0000313|EMBL:AIW43867.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_106_000M1_scaffold_219_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4618..6894)
DNA (2277bp) protein (759aa)
DNA gyrase subunit B {ECO:0000313|EMBL:CCK35139.1}; EC=5.99.1.3 {ECO:0000313|EMBL:CCK35139.1};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
DNA gyrase, B subunit, C-terminal domain protein n=4 Tax=Bifidobacterium longum RepID=C5EC62_BIFLI
DNA topoisomerase IV subunit B
L3_106_000M1_scaffold_219_5
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6952..8376)
DNA (1425bp) protein (475aa)
RNA polymerase sigma factor SigA n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NDI4_9BIFI
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
RNA polymerase sigma factor RpoD
L3_106_000M1_scaffold_219_6
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8575..9240)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NE89_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY95487.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
hypothetical protein
L3_106_000M1_scaffold_219_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9445..10527
DNA (1083bp) protein (361aa)
Probably bifunctional short chain isoprenyl diphosphate synthase [includes: farnesyl pyrophosphate synthetase (Fpp synthetase) (Dimethylallyltransferase) geranyltranstransferase ] n=2 Tax=Bifidobacterium longum RepID=Q8G4G0_BIFLO
ispA; ispa
Serralysin {ECO:0000313|EMBL:KEY25526.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_106_000M1_scaffold_219_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10671..12944
DNA (2274bp) protein (758aa)
Probable serine/threonine-protein kinase pknA2 n=4 Tax=Bifidobacterium longum RepID=PKNA2_BIFLO
Putative serine-threonine protein kinase {ECO:0000313|EMBL:BAJ71357.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
serine-threonine protein kinase
L3_106_000M1_scaffold_219_9
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12996..13700)
DNA (705bp) protein (235aa)
Putative acyltransferase n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MUN7_9BIFI
Putative acyltransferase {ECO:0000313|EMBL:CCY95490.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
plsC1; 1-acyl-sn-glycerol-3-phosphate acyltransferase
L3_106_000M1_scaffold_219_10
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13761..14456
DNA (696bp) protein (232aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=B3DR94_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY95491.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_106_000M1_scaffold_219_11
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14610..14798)
DNA (189bp) protein (63aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=B3DR93_BIFLD
Uncharacterized protein {ECO:0000313|EMBL:CCY95492.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
hypothetical protein
L3_106_000M1_scaffold_219_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14845..15891)
DNA (1047bp) protein (349aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
Anthranilate phosphoribosyltransferase n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R2E8_BIFLM
trpD; trpd
L3_106_000M1_scaffold_219_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16276..16455
DNA (180bp) protein (60aa)
Uncharacterized protein n=10 Tax=Bifidobacterium RepID=B3DR91_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ29488.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_106_000M1_scaffold_219_14
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16481..16834
DNA (354bp) protein (118aa)
Transposase n=3 Tax=Bifidobacterium RepID=B3DR90_BIFLD
truncated transposase
Truncated transposase {ECO:0000313|EMBL:CCY95496.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_106_000M1_scaffold_219_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17145..20039)
DNA (2895bp) protein (965aa)
Protein translocase subunit SecA n=6 Tax=Bifidobacterium longum RepID=SECA_BIFLD
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
preprotein translocase subunit SecA
L3_106_000M1_scaffold_219_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20201..20863)
DNA (663bp) protein (221aa)
Ribosome-associated protein Y n=12 Tax=Bifidobacterium RepID=B3DR88_BIFLD
hypothetical protein
Ribosome-associated protein Y {ECO:0000313|EMBL:ACD97732.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_106_000M1_scaffold_219_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20994..21572)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G4G7_BIFLO
Uncharacterized protein {ECO:0000313|EMBL:BAP83751.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
hypothetical protein
L3_106_000M1_scaffold_219_18
unknown

Not on your lists

21785..22126
DNA (342bp) protein (114aa)

This feature has no annotations

L3_106_000M1_scaffold_219_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(22336..23529)
DNA (1194bp) protein (398aa)
Protein RecA n=13 Tax=Bifidobacterium RepID=RECA_BIFLO
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_106_000M1_scaffold_219_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23830..24063)
DNA (234bp) protein (78aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=B7GQG7_BIFLS
Protein of unknown function (DUF3046).
Uncharacterized protein {ECO:0000313|EMBL:CBK70359.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_106_000M1_scaffold_219_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24175..24690)
DNA (516bp) protein (172aa)
Possible DNA binding protein n=15 Tax=Bifidobacterium RepID=Q8G4H0_BIFLO
Helix-turn-helix.
XRE family transcriptional regulator {ECO:0000313|EMBL:KEY31409.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_106_000M1_scaffold_219_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24750..25283)
DNA (534bp) protein (178aa)
Putative nucleotide-utilizing enzyme n=2 Tax=Bifidobacterium longum RepID=B3DR83_BIFLD
cinA; nucleotide-utilizing enzyme
Putative nucleotide-utilizing enzyme {ECO:0000313|EMBL:ACD97727.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_106_000M1_scaffold_219_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25295..25930)
DNA (636bp) protein (212aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=12 Tax=Bifidobacterium RepID=Q8G4H2_BIFLO
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Phosphatidylglycerophosphate synthase {ECO:0000313|EMBL:ACD97726.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_106_000M1_scaffold_219_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26107..29016)
DNA (2910bp) protein (970aa)
FtsK/SpoIIIE family protein n=1 Tax=Bifidobacterium longum subsp. longum 1-6B RepID=I3AVF3_BIFLN
Cell division protein FtsK {ECO:0000313|EMBL:BAJ71371.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
cell division protein FtsK
L3_106_000M1_scaffold_219_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29165..29977
DNA (813bp) protein (271aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=Q8CY48_BIFLO
hypothetical protein
Fic family protein {ECO:0000313|EMBL:EEI79799.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_106_000M1_scaffold_219_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30011..30997)
DNA (987bp) protein (329aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
tRNA dimethylallyltransferase n=13 Tax=Bifidobacterium RepID=MIAA_BIFLD
tRNA delta(2)-isopentenylpyrophosphate transferase
L3_106_000M1_scaffold_219_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31008..32462)
DNA (1455bp) protein (485aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=10 Tax=Bifidobacterium RepID=MIAB_BIFLD
miaB; miab
L3_106_000M1_scaffold_219_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32492..33334
DNA (843bp) protein (281aa)
Uncharacterized protein n=3 Tax=Bifidobacterium longum RepID=Q8G4H5_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN25206.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_106_000M1_scaffold_219_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33367..34383)
DNA (1017bp) protein (339aa)
EamA-like transporter family n=14 Tax=Bifidobacterium RepID=D6DCY1_BIFLN
hypothetical protein
Possible integral membrane protein with duf6 {ECO:0000313|EMBL:AAN25205.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_106_000M1_scaffold_219_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34523..35422)
DNA (900bp) protein (300aa)
Integral Membrane protein n=13 Tax=Bifidobacterium longum RepID=E4R2D2_BIFLM
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KEY25547.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Displaying items 1-30 of 102 in total

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