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L3_106_000M1_scaffold_296

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_296_1
unknown

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comp(3..137)
DNA (135bp) protein (45aa)

This feature has no annotations

L3_106_000M1_scaffold_296_2
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(158..1105)
DNA (948bp) protein (316aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
tRNA isopentenyltransferase (miaA) (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KLL9_9FIRM
L3_106_000M1_scaffold_296_3
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1106..3184)
DNA (2079bp) protein (693aa)
DNA mismatch repair protein MutL n=5 Tax=Clostridiales RepID=A5KLM0_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
DNA mismatch repair protein MutL
L3_106_000M1_scaffold_296_4
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3217..5868)
DNA (2652bp) protein (884aa)
DNA mismatch repair protein MutS n=5 Tax=Clostridiales RepID=F3AWE9_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
DNA mismatch repair protein MutS
L3_106_000M1_scaffold_296_5
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6024..6446)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KLM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDK24860.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Predicted membrane protein
L3_106_000M1_scaffold_296_6
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6706..8793
DNA (2088bp) protein (696aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=5 Tax=Clostridiales RepID=A5KLM3_9FIRM
L3_106_000M1_scaffold_296_7
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9025..9291)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=5 Tax=Clostridiales RepID=A5KLM4_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
SSU ribosomal protein S15P
L3_106_000M1_scaffold_296_8
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9429..10331)
DNA (903bp) protein (301aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2 2.7.1.26)
Riboflavin biosynthesis protein RibF n=5 Tax=Clostridiales RepID=A5KLM5_9FIRM
L3_106_000M1_scaffold_296_9
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10400..11353)
DNA (954bp) protein (318aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B n=5 Tax=Clostridiales RepID=A5KLM6_9FIRM
L3_106_000M1_scaffold_296_10
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11376..12371)
DNA (996bp) protein (332aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QIK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26154.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Exopolyphosphatase-related proteins
L3_106_000M1_scaffold_296_11
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12364..12747)
DNA (384bp) protein (128aa)
Ribosome-binding factor A n=5 Tax=Clostridiales RepID=A5KLM8_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
ribosome-binding factor A
L3_106_000M1_scaffold_296_12
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12803..15595)
DNA (2793bp) protein (931aa)
Translation initiation factor IF-2 n=5 Tax=Clostridiales RepID=A5KLM9_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
bacterial translation initiation factor 2 (bIF-2)
L3_106_000M1_scaffold_296_13
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15611..15934)
DNA (324bp) protein (108aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 n=5 Tax=Clostridiales RepID=E5XEP4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26157.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
ribosomal protein L7Ae/L30e/S12e/Gadd45
L3_106_000M1_scaffold_296_14
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15927..16199)
DNA (273bp) protein (91aa)
Cytosolic protein YlxR n=4 Tax=Clostridiales RepID=E5XEP5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26158.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L3_106_000M1_scaffold_296_15
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16220..17434)
DNA (1215bp) protein (405aa)
Transcription termination factor NusA n=4 Tax=Clostridiales RepID=E5XEP6_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
transcription termination factor NusA
L3_106_000M1_scaffold_296_16
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17456..17923)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=4 Tax=Clostridiales RepID=A5KLN3_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_106_000M1_scaffold_296_17
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18136..20379)
DNA (2244bp) protein (748aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit (EC:5.99.1.3)
DNA gyrase/topoisomerase IV, A subunit n=5 Tax=Clostridiales RepID=A5KLN4_9FIRM
L3_106_000M1_scaffold_296_18
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20471..22393)
DNA (1923bp) protein (641aa)
DNA topoisomerase IV subunit B (EC:5.99.1.3)
DNA gyrase, B subunit, C-terminal domain protein n=5 Tax=Clostridiales RepID=A5KLN5_9FIRM
DNA gyrase, subunit B {ECO:0000313|EMBL:EFV20238.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_106_000M1_scaffold_296_19
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22575..23783)
DNA (1209bp) protein (403aa)
Stage II sporulation protein P n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KLN6_9FIRM
Stage II sporulation protein P {ECO:0000313|EMBL:EDK24874.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Stage II sporulation protein P (SpoIIP).
L3_106_000M1_scaffold_296_20
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23836..24822)
DNA (987bp) protein (329aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
GPR endopeptidase (EC:3.4.24.78)
Germination protease n=5 Tax=Clostridiales RepID=A5KLN7_9FIRM
L3_106_000M1_scaffold_296_21
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25106..25369
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=3 Tax=Clostridiales RepID=F3AWD2_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
30S ribosomal protein S20
L3_106_000M1_scaffold_296_22
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25526..26545)
DNA (1020bp) protein (340aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=5 Tax=Clostridiales RepID=A5KLN9_9FIRM
L3_106_000M1_scaffold_296_23
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26569..27066)
DNA (498bp) protein (166aa)
acetolactate synthase, small subunit (EC:2.2.1.6)
Acetolactate synthase, small subunit n=5 Tax=Clostridiales RepID=A5KLP0_9FIRM
Acetolactate synthase {ECO:0000313|EMBL:CCZ26167.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_106_000M1_scaffold_296_24
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27223..29028)
DNA (1806bp) protein (602aa)
ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KLP1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDK24879.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_106_000M1_scaffold_296_25
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29145..30206)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KLP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26169.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
putative lysylphosphatidylglycerol synthetase
L3_106_000M1_scaffold_296_26
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30196..30876)
DNA (681bp) protein (227aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KLP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26170.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_106_000M1_scaffold_296_27
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30963..31979)
DNA (1017bp) protein (339aa)
Glycosyltransferase n=3 Tax=Clostridiales RepID=E5XEQ8_9FIRM
Glycosyltransferase {ECO:0000313|EMBL:EFV20247.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Glycosyltransferases involved in cell wall biogenesis
L3_106_000M1_scaffold_296_28
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32095..32256)
DNA (162bp) protein (54aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5QZL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84453.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_106_000M1_scaffold_296_29
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32486..33247
DNA (762bp) protein (254aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KLP5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV20248.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L3_106_000M1_scaffold_296_30
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33282..34238)
DNA (957bp) protein (319aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=A5KLP6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84451.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Displaying items 1-30 of 99 in total

View Taxonomy