ggKbase home page

L3_106_000M1_scaffold_335

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_335_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

173..745
DNA (573bp) protein (191aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Phosphoribosylglycinamide formyltransferase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WVX7_9PORP
phosphoribosylglycinamide formyltransferase
L3_106_000M1_scaffold_335_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(755..3424)
DNA (2670bp) protein (890aa)
TonB-dependent receptor n=2 Tax=Parabacteroides merdae RepID=A7AHB5_9PORP
TonB-dependent receptor {ECO:0000313|EMBL:EDN85732.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
vitamin B12 receptor
L3_106_000M1_scaffold_335_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3436..4626)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WNU7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11060.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_106_000M1_scaffold_335_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4783..5634
DNA (852bp) protein (284aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZMU1_9PORP
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDD11062.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
transcriptional regulator
L3_106_000M1_scaffold_335_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5645..6844)
DNA (1200bp) protein (400aa)
Transporter, major facilitator family protein n=2 Tax=Parabacteroides merdae RepID=A7AHB8_9PORP
Transporter, major facilitator family protein {ECO:0000313|EMBL:EDN85735.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transmembrane transport protein
L3_106_000M1_scaffold_335_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6863..7975)
DNA (1113bp) protein (371aa)
Erythronate-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01825, ECO:0000256|SAAS:SAAS00019216}; EC=1.1.1.290 {ECO:0000256|HAMAP-Rule:MF_01825, ECO:0000256|SAAS:SAAS00019244};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Erythronate-4-phosphate dehydrogenase n=2 Tax=Parabacteroides merdae RepID=A7AHB9_9PORP
erythronate-4-phosphate dehydrogenase
L3_106_000M1_scaffold_335_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8011..8865)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X4B7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11071.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_335_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9263..9463)
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AHC1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85738.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_106_000M1_scaffold_335_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9724..12216)
DNA (2493bp) protein (831aa)
Outer membrane insertion signal domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WVZ4_9PORP
Outer membrane insertion signal domain protein {ECO:0000313|EMBL:CDD11079.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_335_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12504..13091)
DNA (588bp) protein (196aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AHC3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85740.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_106_000M1_scaffold_335_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13187..13459)
DNA (273bp) protein (91aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6A5C1_9PORP
Putative toxin-antitoxin system antitoxin component {ECO:0000313|EMBL:CDD11083.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_335_12
unknown

Not on your lists

comp(13456..13575)
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6C1P0_9PORP
L3_106_000M1_scaffold_335_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13568..13882)
DNA (315bp) protein (105aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6B2D4_9PORP
Putative toxin-antitoxin system, toxin component {ECO:0000313|EMBL:EDN85742.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
nucleotidyltransferase
L3_106_000M1_scaffold_335_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13946..17572
DNA (3627bp) protein (1209aa)
F5/8 type C domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WNW8_9PORP
F5/8 type C domain protein {ECO:0000313|EMBL:CDD11085.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
F5/8 type C domain-containing protein
L3_106_000M1_scaffold_335_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17837..19261
DNA (1425bp) protein (475aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Parabacteroides merdae RepID=A7AHC8_9PORP
histidine kinase
L3_106_000M1_scaffold_335_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19268..19951
DNA (684bp) protein (228aa)
DNA-binding response regulator MtrA n=3 Tax=Parabacteroides RepID=A7AHC9_9PORP
DNA-binding response regulator MtrA {ECO:0000313|EMBL:CDD11089.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
two-component system response regulator
L3_106_000M1_scaffold_335_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20004..20609
DNA (606bp) protein (202aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AHD0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11091.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_335_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20609..21637
DNA (1029bp) protein (343aa)
Heptosyltransferase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WJ08_9PORP
Heptosyltransferase {ECO:0000313|EMBL:CDD11093.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycosyltransferase family protein
L3_106_000M1_scaffold_335_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21728..22717
DNA (990bp) protein (330aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AHD2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85749.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_106_000M1_scaffold_335_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22701..23621
DNA (921bp) protein (307aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AHD3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85750.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Lipopolysaccharide kinase (Kdo/WaaP) family.
L3_106_000M1_scaffold_335_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23612..24379)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X4F1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11116.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
family 2 glycosyl transferase
L3_106_000M1_scaffold_335_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24407..25177)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WJ30_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11118.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_335_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25431..26129
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WP02_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11120.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative capsular polysaccharide biosynthesis protein
L3_106_000M1_scaffold_335_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26151..27440
DNA (1290bp) protein (430aa)
Nucleotide sugar dehydrogenase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X4F4_9PORP
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:CDD11121.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
UDP-N-acetyl-D-mannosaminuronate dehydrogenase
L3_106_000M1_scaffold_335_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27442..28077)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XY13_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11122.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ribonuclease H-like protein
L3_106_000M1_scaffold_335_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28357..28878
DNA (522bp) protein (174aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Shikimate kinase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WJ32_9PORP
shikimate kinase
L3_106_000M1_scaffold_335_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28947..30146
DNA (1200bp) protein (400aa)
Putative alanine dehydrogenase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WW24_9PORP
Putative alanine dehydrogenase {ECO:0000313|EMBL:CDD11124.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
alanine dehydrogenase
L3_106_000M1_scaffold_335_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30237..32093
DNA (1857bp) protein (619aa)
2-oxoacid:acceptor oxidoreductase alpha subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WP07_9PORP
2-oxoacid:acceptor oxidoreductase alpha subunit {ECO:0000313|EMBL:CDD11125.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
oxidoreductase
L3_106_000M1_scaffold_335_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32097..33113
DNA (1017bp) protein (339aa)
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein n=3 Tax=Parabacteroides merdae RepID=A7AHE4_9PORP
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein {ECO:0000313|EMBL:EDN85761.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
2-oxoglutarate ferredoxin oxidoreductase subunit beta
L3_106_000M1_scaffold_335_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33162..33518
DNA (357bp) protein (119aa)
Nucleotidyltransferase domain protein n=5 Tax=Parabacteroides RepID=A7AHE5_9PORP
Nucleotidyltransferase domain protein {ECO:0000313|EMBL:CDD15026.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
Displaying items 1-30 of 75 in total

View Taxonomy