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L3_106_000M1_scaffold_346

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_346_1
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


comp(1..339)
DNA (339bp) protein (113aa)
50S ribosomal protein L2 n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZJQ3_9FIRM
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
rplB; 50S ribosomal protein L2
L3_106_000M1_scaffold_346_2
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


comp(355..654)
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YI38_9FIRM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_106_000M1_scaffold_346_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(654..1274)
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGX4_9FIRM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rplD; 50S ribosomal protein L4
L3_106_000M1_scaffold_346_4
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


comp(1294..2022)
DNA (729bp) protein (243aa)
50S ribosomal protein L3 n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YET1_9FIRM
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
rplC; 50S ribosomal protein L3
L3_106_000M1_scaffold_346_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2285..2596)
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGX6_9FIRM
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_346_6
unknown

Not on your lists

comp(3029..3733)
DNA (705bp) protein (235aa)

This feature has no annotations

L3_106_000M1_scaffold_346_7
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3730..4572)
DNA (843bp) protein (281aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIP7_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX43910.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_106_000M1_scaffold_346_8
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4587..4952)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M8A9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS67274.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_106_000M1_scaffold_346_9
unknown

Not on your lists

comp(4957..5622)
DNA (666bp) protein (222aa)

This feature has no annotations

L3_106_000M1_scaffold_346_10
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5634..5993)
DNA (360bp) protein (120aa)
Transcriptional regulator, PadR family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQ05_9FIRM
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EDN01930.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
PadR family transcriptional regulator
L3_106_000M1_scaffold_346_11
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(6145..7593)
DNA (1449bp) protein (483aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
pncB; nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XZD8_9FIRM
L3_106_000M1_scaffold_346_12
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7783..8385
DNA (603bp) protein (201aa)
Putative rubrerythrin n=3 Tax=Clostridiales RepID=G9YRB1_9FIRM
Putative rubrerythrin {ECO:0000313|EMBL:ERI65232.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Rubrerythrin
L3_106_000M1_scaffold_346_13
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(8429..9952)
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YIA9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14941.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
putative metalloendopeptidase
L3_106_000M1_scaffold_346_14
unknown

Not on your lists

comp(10267..10557)
DNA (291bp) protein (97aa)

This feature has no annotations

L3_106_000M1_scaffold_346_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

11099..12928
DNA (1830bp) protein (610aa)
GTP-binding protein TypA/BipA n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XZ02_9FIRM
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:ESL14939.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
typA; GTP-binding protein TypA
L3_106_000M1_scaffold_346_16
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(13034..13267)
DNA (234bp) protein (78aa)
Preprotein translocase, SecG subunit n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YIR4_9FIRM
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:ESL15061.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
secG; preprotein translocase SecG subunit
L3_106_000M1_scaffold_346_17
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(13455..13832)
DNA (378bp) protein (126aa)
Putative endoribonuclease L-PSP n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IKM6_9FIRM
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:CCY40869.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
endoribonuclease L-PSP
L3_106_000M1_scaffold_346_18
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(13938..14834)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZKB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15060.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_106_000M1_scaffold_346_19
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14831..15076)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00037CD149
Uncharacterized protein {ECO:0000313|EMBL:EOS41569.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
L3_106_000M1_scaffold_346_20
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(15093..16970)
DNA (1878bp) protein (626aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YHL5_9FIRM
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
L3_106_000M1_scaffold_346_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17263..17715
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLL5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83062.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_106_000M1_scaffold_346_22
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

18088..20151
DNA (2064bp) protein (688aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XYG6_9FIRM
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:ESL14724.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
recJ; single-stranded-DNA-specific exonuclease RecJ
L3_106_000M1_scaffold_346_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20193..22427
DNA (2235bp) protein (745aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5)
GTP pyrophosphokinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE56_9FIRM
GTP pyrophosphokinase {ECO:0000313|EMBL:EGJ46356.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_346_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22449..22658
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46357.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_346_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22686..23126
DNA (441bp) protein (147aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE58_9FIRM
D-tyrosyl-tRNA(Tyr) deacylase
L3_106_000M1_scaffold_346_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23252..23866
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46359.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_346_27
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

23879..25336
DNA (1458bp) protein (486aa)
hemZ; coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XYH0_9FIRM
Coproporphyrinogen dehydrogenase HemZ {ECO:0000313|EMBL:ESL14729.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_106_000M1_scaffold_346_28
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

25382..26320
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZJA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14730.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
putative phosphotransferase
L3_106_000M1_scaffold_346_29
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

26442..28295
DNA (1854bp) protein (618aa)
putative glycoside hydrolase (EC:3.2.1.-)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YHQ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14731.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_106_000M1_scaffold_346_30
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28443..29252
DNA (810bp) protein (270aa)
DNA-binding helix-turn-helix protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NR38_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDN01534.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
Displaying items 1-30 of 100 in total

View Taxonomy