ggKbase home page

L3_106_000M1_scaffold_371

Search features with annotation key words

Displaying items 1-30 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_371_1
unknown

Not on your lists

comp(1..60)
DNA (60bp) protein (20aa)

This feature has no annotations

L3_106_000M1_scaffold_371_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(100..2715)
DNA (2616bp) protein (872aa)
DNA mismatch repair protein MutS n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7X3_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
DNA mismatch repair protein MutS
L3_106_000M1_scaffold_371_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2836..3243)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7X4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU96036.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Protein of unknown function (DUF964).
L3_106_000M1_scaffold_371_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3313..4695)
DNA (1383bp) protein (461aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB (EC:2.-.-.-)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7X5_9FIRM
L3_106_000M1_scaffold_371_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4796..5182)
DNA (387bp) protein (129aa)
Transcriptional regulator, Fur family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7X6_9FIRM
Transcriptional regulator, Fur family {ECO:0000313|EMBL:EEU96038.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Fe2+/Zn2+ uptake regulation proteins
L3_106_000M1_scaffold_371_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5206..6480)
DNA (1275bp) protein (425aa)
ATPase, AAA family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7X7_9FIRM
ATPase, AAA family {ECO:0000313|EMBL:EEU96039.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Recombination protein MgsA
L3_106_000M1_scaffold_371_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6669..7370
DNA (702bp) protein (234aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Predicted EndoIII-related endonuclease (EC:4.2.99.18)
Endonuclease III n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7X9_9FIRM
L3_106_000M1_scaffold_371_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7367..7699
DNA (333bp) protein (111aa)
Transglycosylase associated protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Y0_9FIRM
Transglycosylase associated protein {ECO:0000313|EMBL:EEU96042.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Transglycosylase associated protein.
L3_106_000M1_scaffold_371_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7837..8154
DNA (318bp) protein (106aa)
Transcriptional regulator, PadR family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Y1_9FIRM
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EEU96043.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
transcriptional regulator, PadR family
L3_106_000M1_scaffold_371_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8151..8657
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Y2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU96044.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Protein of unknown function (DUF2812).
L3_106_000M1_scaffold_371_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8810..9310
DNA (501bp) protein (167aa)
Transcriptional regulator, MarR family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Y3_9FIRM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEU96045.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
transcriptional regulator, MarR family
L3_106_000M1_scaffold_371_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9303..11612
DNA (2310bp) protein (770aa)
ABC transporter, ATP-binding protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Y4_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEU96046.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
ABC-type multidrug transport system, ATPase and permease components
L3_106_000M1_scaffold_371_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11614..13425
DNA (1812bp) protein (604aa)
ABC transporter, ATP-binding protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAM6_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDP21594.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
ABC-type multidrug transport system, ATPase and permease components
L3_106_000M1_scaffold_371_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13553..14314
DNA (762bp) protein (254aa)
AzlC protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Y9_9FIRM
AzlC protein {ECO:0000313|EMBL:EEU95955.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Predicted branched-chain amino acid permease (azaleucine resistance)
L3_106_000M1_scaffold_371_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14311..14622
DNA (312bp) protein (104aa)
Branched-chain amino acid transport protein (AzlD) n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Z0_9FIRM
Branched-chain amino acid transport protein (AzlD) {ECO:0000313|EMBL:EEU95956.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Branched-chain amino acid transport protein (AzlD).
L3_106_000M1_scaffold_371_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14768..15259
DNA (492bp) protein (164aa)
Sigma-70 region 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNX7_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EFB75473.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
sigma factor
L3_106_000M1_scaffold_371_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15256..16074
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Z3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95959.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L3_106_000M1_scaffold_371_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16091..16924
DNA (834bp) protein (278aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Z5_9FIRM
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EEU95961.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L3_106_000M1_scaffold_371_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17095..18591)
DNA (1497bp) protein (499aa)
Stage IV sporulation protein A n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Z6_9FIRM
Stage IV sporulation protein A {ECO:0000313|EMBL:EEU95962.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
stage IV sporulation protein A
L3_106_000M1_scaffold_371_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18776..19789
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Z7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95963.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L3_106_000M1_scaffold_371_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19840..20691)
DNA (852bp) protein (284aa)
Transcriptional regulator, RpiR family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Z8_9FIRM
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EEU95965.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Transcriptional regulators
L3_106_000M1_scaffold_371_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20693..20887
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7Z9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95964.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L3_106_000M1_scaffold_371_23
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21198..22550
DNA (1353bp) protein (451aa)
Tat pathway signal sequence domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H801_9FIRM
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEU95967.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_106_000M1_scaffold_371_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22682..23611
DNA (930bp) protein (310aa)
ABC transporter, permease protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H802_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEU95968.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_106_000M1_scaffold_371_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23626..24603
DNA (978bp) protein (326aa)
ABC transporter, permease protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H803_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEU95969.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_106_000M1_scaffold_371_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24895..25824
DNA (930bp) protein (310aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase (EC:4.1.3.3)
Putative N-acetylneuraminate lyase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H805_9FIRM
Putative N-acetylneuraminate lyase {ECO:0000313|EMBL:EEU95971.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L3_106_000M1_scaffold_371_27
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25896..26357
DNA (462bp) protein (154aa)
YhcH/YjgK/YiaL family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H806_9FIRM
YhcH/YjgK/YiaL family protein {ECO:0000313|EMBL:EEU95972.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L3_106_000M1_scaffold_371_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26350..27054
DNA (705bp) protein (235aa)
Putative N-acetylmannosamine-6-phosphate 2-epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; EC=5.1.3.9 {ECO:0000256|HAMAP-Rule:MF_01235};; ManNAc-6-P epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Putative N-acetylmannosamine-6-phosphate epimerase (EC:5.1.3.9)
Putative N-acetylmannosamine-6-phosphate 2-epimerase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H807_9FIRM
L3_106_000M1_scaffold_371_29
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27070..27999
DNA (930bp) protein (310aa)
Transcriptional regulator/sugar kinase (EC:2.7.1.2)
ROK family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H808_9FIRM
ROK family protein {ECO:0000313|EMBL:EEU95974.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L3_106_000M1_scaffold_371_30
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28030..28668
DNA (639bp) protein (213aa)
GDSL-like protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H809_9FIRM
GDSL-like protein {ECO:0000313|EMBL:EEU95975.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Lysophospholipase L1 and related esterases
Displaying items 1-30 of 103 in total

View Taxonomy