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L3_106_000M1_scaffold_413

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_413_1
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

219..452
DNA (234bp) protein (78aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=F3PHC3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGF52733.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
lipoprotein
L3_106_000M1_scaffold_413_2
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

824..2320
DNA (1497bp) protein (499aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=2 Tax=Bacteroides RepID=F3PHC4_9BACE
L3_106_000M1_scaffold_413_3
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2394..3797
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=2 Tax=Bacteroides RepID=F3PHC5_9BACE
L3_106_000M1_scaffold_413_4
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3819..4412
DNA (594bp) protein (198aa)
3-isopropylmalate dehydratase {ECO:0000256|SAAS:SAAS00089872}; EC=4.2.1.33 {ECO:0000256|SAAS:SAAS00089872};; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
leuD; putative 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase, small subunit n=2 Tax=Bacteroides RepID=F3PHC6_9BACE
L3_106_000M1_scaffold_413_5
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4432..5943
DNA (1512bp) protein (504aa)
(R)-citramalate synthase (EC:2.3.1.182)
HMGL-like protein n=2 Tax=Bacteroides RepID=F3PHC7_9BACE
HMGL-like protein {ECO:0000313|EMBL:EGF52737.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
L3_106_000M1_scaffold_413_6
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6032..7090
DNA (1059bp) protein (353aa)
3-isopropylmalate dehydrogenase {ECO:0000256|RuleBase:RU004445, ECO:0000256|SAAS:SAAS00089855}; EC=1.1.1.85 {ECO:0000256|RuleBase:RU004445, ECO:0000256|SAAS:SAAS00089855};; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PHC8_9BACE
L3_106_000M1_scaffold_413_7
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7217..8173
DNA (957bp) protein (319aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
cysteine synthase (EC:2.5.1.47)
Cysteine synthase A n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PHC9_9BACE
L3_106_000M1_scaffold_413_8
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8398..9249
DNA (852bp) protein (284aa)
Tetratricopeptide repeat protein n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PHD1_9BACE
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EGF52740.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
hypothetical protein
L3_106_000M1_scaffold_413_9
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9347..11161)
DNA (1815bp) protein (605aa)
ATP-dependent DNA helicase RecQ (EC:3.6.1.-)
ATP-dependent DNA helicase RecQ n=1 Tax=Bacteroides clarus CAG:160 RepID=R6LBF4_9BACE
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:CDB83110.1}; TaxID=1263039 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
L3_106_000M1_scaffold_413_10
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11441..11905
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=F3PHD4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB83109.1}; TaxID=1263039 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
putative AraC-family regulatory protein
L3_106_000M1_scaffold_413_11
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12005..14053
DNA (2049bp) protein (683aa)
peptidase 3 (EC:3.4.14.4)
Peptidase family M49 n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PHD5_9BACE
Peptidase family M49 {ECO:0000313|EMBL:EGF52745.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
L3_106_000M1_scaffold_413_12
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14347..15009
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PHD6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGF52746.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
hypothetical protein
L3_106_000M1_scaffold_413_13
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15142..15630
DNA (489bp) protein (163aa)
Transcriptional regulator, Fur family n=2 Tax=Bacteroides RepID=F3PHD7_9BACE
Transcriptional regulator, Fur family {ECO:0000313|EMBL:EGF52747.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
ferric uptake regulator, Fur family
L3_106_000M1_scaffold_413_14
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15627..16895
DNA (1269bp) protein (423aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=2 Tax=Bacteroides RepID=F3PHD8_9BACE
L3_106_000M1_scaffold_413_15
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17031..17726
DNA (696bp) protein (232aa)
Putative neutral zinc metallopeptidase n=2 Tax=Bacteroides RepID=F3PHD9_9BACE
Putative neutral zinc metallopeptidase {ECO:0000313|EMBL:EGF52749.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
peptidase membrane zinc metallopeptidase
L3_106_000M1_scaffold_413_16
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


17851..19212
DNA (1362bp) protein (454aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=2 Tax=Bacteroides RepID=F3PHE0_9BACE
L3_106_000M1_scaffold_413_17
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19341..19499
DNA (159bp) protein (53aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=F3PHE1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB83102.1}; TaxID=1263039 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
hypothetical protein
L3_106_000M1_scaffold_413_18
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19804..21306
DNA (1503bp) protein (501aa)
Glutamate--ammonia ligase, catalytic domain protein n=2 Tax=Bacteroides RepID=F3PHE2_9BACE
Glutamate--ammonia ligase catalytic domain protein {ECO:0000313|EMBL:CDB83101.1}; TaxID=1263039 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
glutamine synthetase
L3_106_000M1_scaffold_413_19
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21365..22216)
DNA (852bp) protein (284aa)
Sodium bile acid symporter family protein n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PHE3_9BACE
Sodium bile acid symporter family protein {ECO:0000313|EMBL:EGF52753.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
Predicted Na+-dependent transporter
L3_106_000M1_scaffold_413_20
Bacteroides uniformis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22402..22674
DNA (273bp) protein (91aa)
10 kDa chaperonin n=15 Tax=Bacteroides RepID=A7V0P9_BACUN
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1235787 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides uniformis dnLKV2.;"
Chaperonin Cpn10
L3_106_000M1_scaffold_413_21
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22716..24353
DNA (1638bp) protein (546aa)
60 kDa chaperonin n=2 Tax=Bacteroides RepID=F3PHE5_9BACE
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1263039 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
molecular chaperone GroEL
L3_106_000M1_scaffold_413_22
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24609..24827
DNA (219bp) protein (73aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=F3PHE6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB83096.1}; TaxID=1263039 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
hypothetical protein
L3_106_000M1_scaffold_413_23
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24982..26004
DNA (1023bp) protein (341aa)
L-threonine aldolase (EC:4.1.2.5)
Beta-eliminating lyase n=2 Tax=Bacteroides RepID=R6LBE1_9BACE
Beta-eliminating lyase {ECO:0000313|EMBL:CDB83095.1}; TaxID=1263039 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
L3_106_000M1_scaffold_413_24
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26171..28699)
DNA (2529bp) protein (843aa)
Polysaccharide deacetylase n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PHE9_9BACE
Polysaccharide deacetylase {ECO:0000313|EMBL:EGF52759.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
glycoside hydrolase family 9
L3_106_000M1_scaffold_413_25
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29011..29988
DNA (978bp) protein (326aa)
Curved DNA-binding protein n=1 Tax=Bacteroides stercoris CC31F RepID=S3Y8V2_BACSE
Curved DNA-binding protein {ECO:0000313|EMBL:EPH18122.1}; TaxID=1073351 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris CC31F.;"
molecular chaperone DnaJ
L3_106_000M1_scaffold_413_26
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30004..30300
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=F3PHF1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB82977.1}; TaxID=1263039 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
hypothetical protein
L3_106_000M1_scaffold_413_27
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30380..32086)
DNA (1707bp) protein (569aa)
Acyl-CoA dehydrogenase protein n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PHF2_9BACE
Acyl-CoA dehydrogenase protein {ECO:0000313|EMBL:EGF52762.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
acyl-CoA dehydrogenase
L3_106_000M1_scaffold_413_28
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32094..33113)
DNA (1020bp) protein (340aa)
Electron transfer flavoprotein subunit alpha n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PHF3_9BACE
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:EGF52763.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
Electron transfer flavoprotein alpha subunit
L3_106_000M1_scaffold_413_29
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33118..34011)
DNA (894bp) protein (298aa)
Electron transfer flavoprotein n=1 Tax=Bacteroides clarus CAG:160 RepID=R6LHF9_9BACE
Electron transfer flavoprotein {ECO:0000313|EMBL:CDB82974.1}; TaxID=1263039 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
Electron transfer flavoprotein alpha/beta-subunit
L3_106_000M1_scaffold_413_30
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34337..36097
DNA (1761bp) protein (587aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897};; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
Putative 1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PHF6_9BACE
Displaying items 1-30 of 87 in total

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