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L3_106_000M1_scaffold_513

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_513_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..459)
DNA (459bp) protein (153aa)
Bacterial Ig-like domain (Group 2) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXB6_9FIRM
Bacterial Ig-like domain (group 2).
Bacterial Ig-like domain (Group 2) {ECO:0000313|EMBL:CBL12006.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_106_000M1_scaffold_513_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1241..1990)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXB5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12005.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_106_000M1_scaffold_513_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2308..4104
DNA (1797bp) protein (599aa)
Fibronectin-binding protein A domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7N3_9FIRM
Fibronectin-binding protein A domain protein {ECO:0000313|EMBL:EEV02181.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Predicted RNA-binding protein homologous to eukaryotic snRNP
L3_106_000M1_scaffold_513_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4265..5122)
DNA (858bp) protein (286aa)
CAAX amino terminal protease family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7N2_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EEV02180.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
CAAX amino terminal protease family.
L3_106_000M1_scaffold_513_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5165..6292)
DNA (1128bp) protein (376aa)
Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR51_9FIRM
Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins
Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins {ECO:0000313|EMBL:CBL09353.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_106_000M1_scaffold_513_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6713..6919
DNA (207bp) protein (69aa)
Small, acid-soluble spore proteins, alpha/beta type n=4 Tax=Roseburia RepID=D4KXB1_9FIRM
Small, acid-soluble spore proteins, alpha/beta type.
Small, acid-soluble spore protein, alpha/beta type {ECO:0000313|EMBL:EEV02177.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_106_000M1_scaffold_513_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7110..9167)
DNA (2058bp) protein (686aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CBL12000.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBL12000.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
ATP-dependent DNA helicase RecG n=2 Tax=Roseburia RepID=D4KXB0_9FIRM
L3_106_000M1_scaffold_513_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9181..10878)
DNA (1698bp) protein (566aa)
DAK2 domain fusion protein YloV n=2 Tax=Roseburia RepID=C7G7M6_9FIRM
DAK2 domain protein {ECO:0000313|EMBL:CDA54716.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
DegV protein
L3_106_000M1_scaffold_513_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10893..11252)
DNA (360bp) protein (120aa)
Uncharacterized protein conserved in bacteria n=3 Tax=Roseburia RepID=D4KXA9_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL09356.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_106_000M1_scaffold_513_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


11459..11644
DNA (186bp) protein (62aa)
50S ribosomal protein L28 n=5 Tax=Roseburia RepID=D4KR55_9FIRM
LSU ribosomal protein L28P
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_513_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11773..13038)
DNA (1266bp) protein (422aa)
Fibronectin type III domain n=2 Tax=Roseburia RepID=D4KXA6_9FIRM
Fibronectin type III domain.
Fibronectin type III domain {ECO:0000313|EMBL:CDA54721.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_513_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13143..14051)
DNA (909bp) protein (303aa)
Sugar phosphate isomerases/epimerases n=4 Tax=Roseburia RepID=D4KR58_9FIRM
Sugar phosphate isomerases/epimerases
Sugar phosphate isomerases/epimerases {ECO:0000313|EMBL:CBL11995.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_106_000M1_scaffold_513_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14005..15561)
DNA (1557bp) protein (519aa)
Endopolygalacturonase n=2 Tax=Roseburia intestinalis RepID=D4KR59_9FIRM
Polygalacturonase (Pectinase) {ECO:0000313|EMBL:EEV02169.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Endopolygalacturonase
L3_106_000M1_scaffold_513_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15576..16214)
DNA (639bp) protein (213aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G7M0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA54726.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_513_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16247..18139)
DNA (1893bp) protein (631aa)
Beta-xylosidase (EC:3.2.1.37)
Glycosyl hydrolase, family 43 n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7L9_9FIRM
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EEV02167.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_106_000M1_scaffold_513_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18143..19723)
DNA (1581bp) protein (527aa)
Glycosyl hydrolase, family 43 n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7L8_9FIRM
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EEV02166.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Beta-xylosidase
L3_106_000M1_scaffold_513_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19781..20467)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7L7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02165.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Lysophospholipase L1 and related esterases
L3_106_000M1_scaffold_513_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20482..21324)
DNA (843bp) protein (281aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=4 Tax=Roseburia RepID=D4KR64_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA54732.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_513_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21340..22305)
DNA (966bp) protein (322aa)
ABC-type polysaccharide transport system, permease component n=4 Tax=Roseburia RepID=D4KR65_9FIRM
ABC-type polysaccharide transport system, permease component
ABC-type polysaccharide transport system permease component {ECO:0000313|EMBL:CDA54734.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_106_000M1_scaffold_513_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22423..24021)
DNA (1599bp) protein (533aa)
ABC-type sugar transport system, periplasmic component n=3 Tax=Roseburia RepID=D4KX96_9FIRM
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:CDA54735.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
ABC-type sugar transport system, periplasmic component
L3_106_000M1_scaffold_513_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24276..26543
DNA (2268bp) protein (756aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KX95_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CBL11985.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
AraC-type DNA-binding domain-containing proteins
L3_106_000M1_scaffold_513_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26565..27995
DNA (1431bp) protein (477aa)
Beta-lactamase class C and other penicillin binding proteins n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KX94_9FIRM
Beta-lactamase class C and other penicillin binding proteins
Beta-lactamase class C and other penicillin binding proteins {ECO:0000313|EMBL:CBL11984.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_106_000M1_scaffold_513_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28482..29285)
DNA (804bp) protein (268aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.69)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:CBL11983.1}; EC=1.1.1.69 {ECO:0000313|EMBL:CBL11983.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=3 Tax=Roseburia RepID=D4KX93_9FIRM
L3_106_000M1_scaffold_513_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29445..30926)
DNA (1482bp) protein (494aa)
D-altronate dehydratase (EC:4.2.1.7)
D-altronate dehydratase {ECO:0000313|EMBL:CBL11981.1}; EC=4.2.1.7 {ECO:0000313|EMBL:CBL11981.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
D-altronate dehydratase n=2 Tax=Roseburia intestinalis RepID=D4KX91_9FIRM
L3_106_000M1_scaffold_513_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30941..32407)
DNA (1467bp) protein (489aa)
tagaturonate reductase (EC:1.1.1.58)
Mannitol dehydrogenase domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7K8_9FIRM
Mannitol dehydrogenase domain protein {ECO:0000313|EMBL:EEV02156.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_106_000M1_scaffold_513_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32727..33737
DNA (1011bp) protein (337aa)
Transcriptional regulator, LacI family n=2 Tax=Roseburia intestinalis RepID=D4KX89_9FIRM
transcriptional regulator, LacI family
Transcriptional regulator, LacI family {ECO:0000313|EMBL:CBL11979.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_106_000M1_scaffold_513_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33762..35177
DNA (1416bp) protein (472aa)
D-glucuronate isomerase (EC:5.3.1.12)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Uronate isomerase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR73_9FIRM
L3_106_000M1_scaffold_513_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35285..36148
DNA (864bp) protein (288aa)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; EC=5.3.1.17 {ECO:0000256|HAMAP-Rule:MF_00687};; 5-keto-4-deoxyuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; DKI isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
4-deoxy-L-threo-5-hexulose uronate isomerase (EC:5.3.1.17)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B164_9FIRM
L3_106_000M1_scaffold_513_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36268..36906
DNA (639bp) protein (213aa)
Ribose 5-phosphate isomerase RpiB n=4 Tax=Roseburia RepID=D4KR75_9FIRM
Ribose 5-phosphate isomerase RpiB
Ribose 5-phosphate isomerase RpiB {ECO:0000313|EMBL:CBL11976.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_106_000M1_scaffold_513_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37128..37565)
DNA (438bp) protein (146aa)
Uncharacterized conserved protein n=3 Tax=Roseburia RepID=D4KX84_9FIRM
hypothetical protein
Sporulation protein YtfJ {ECO:0000313|EMBL:EEV02150.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Displaying items 1-30 of 68 in total

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