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L3_106_000M1_scaffold_595

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_595_1
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..534
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NGN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS79172.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Predicted permease
L3_106_000M1_scaffold_595_2
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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615..1145
DNA (531bp) protein (177aa)
Transcriptional regulator, TetR family n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LBD4_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EET62265.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Bacterial regulatory proteins, tetR family.
L3_106_000M1_scaffold_595_3
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

1303..1725
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BRS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA63664.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
L3_106_000M1_scaffold_595_4
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1732..3570
DNA (1839bp) protein (613aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZXV1_9FIRM
L3_106_000M1_scaffold_595_5
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3542..4198
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MXG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS72512.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
nucleoside recognition domain containing protein
L3_106_000M1_scaffold_595_6
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4200..4724
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WPZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX75907.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Uncharacterized membrane protein
L3_106_000M1_scaffold_595_7
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4867..5454
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN30955.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L3_106_000M1_scaffold_595_8
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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5487..6509
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6R9P0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC45623.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Protein of unknown function (DUF2804).
L3_106_000M1_scaffold_595_9
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6560..6835
DNA (276bp) protein (92aa)
Acylphosphatases (EC:3.6.1.7)
Acylphosphatase n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JMM0_9FIRM
Acylphosphatase {ECO:0000313|EMBL:EGN38143.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
L3_106_000M1_scaffold_595_10
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6888..7364
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G9F5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR46309.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L3_106_000M1_scaffold_595_11
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8255..9037
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2B7N5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ32784.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
Uncharacterized protein conserved in cyanobacteria
L3_106_000M1_scaffold_595_12
Anaerostipes sp. CAG:276, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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9166..9867
DNA (702bp) protein (234aa)
Haloacid dehalogenase hydrolase n=2 Tax=Anaerostipes RepID=E5VW48_9FIRM
Haloacid dehalogenase hydrolase {ECO:0000313|EMBL:CDC35981.1}; TaxID=1262699 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes; environmental samples.;" source="Anaerostipes sp. CAG:276.;"
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L3_106_000M1_scaffold_595_13
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9864..11099
DNA (1236bp) protein (412aa)
Transporter, major facilitator family protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BFB7_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEG87962.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
Arabinose efflux permease
L3_106_000M1_scaffold_595_14
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11530..12588
DNA (1059bp) protein (353aa)
iron-only hydrogenase maturation protein HydE (EC:2.8.1.6)
Iron-only hydrogenase maturation protein HydE {ECO:0000313|EMBL:CBL21664.1}; EC=2.8.1.6 {ECO:0000313|EMBL:CBL21664.1};; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
Iron-only hydrogenase maturation protein HydE n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LPA3_9FIRM
L3_106_000M1_scaffold_595_15
unknown

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comp(12722..12850)
DNA (129bp) protein (43aa)

This feature has no annotations

L3_106_000M1_scaffold_595_16
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13190..14947)
DNA (1758bp) protein (586aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5D6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG72673.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L3_106_000M1_scaffold_595_17
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15130..16695
DNA (1566bp) protein (522aa)
Amino acid carrier protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D2D6_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:CCX74368.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
amino acid carrier protein
L3_106_000M1_scaffold_595_18
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17140..19059
DNA (1920bp) protein (640aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BI90_9FIRM
L3_106_000M1_scaffold_595_19
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19080..19844
DNA (765bp) protein (255aa)
hydrolase, TatD family (EC:3.1.21.-)
Hydrolase, TatD family n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BI89_9FIRM
Hydrolase, TatD family {ECO:0000313|EMBL:EDM62624.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L3_106_000M1_scaffold_595_20
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20083..20955
DNA (873bp) protein (291aa)
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Clostridiales RepID=D4M4E4_9FIRM
L3_106_000M1_scaffold_595_21
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21036..22421
DNA (1386bp) protein (462aa)
Citrate synthase (EC:2.3.3.5 2.3.3.1)
Citrate synthase n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5D1_9CLOT
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
L3_106_000M1_scaffold_595_22
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22415..23341
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5D0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG72667.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Lysophospholipase
L3_106_000M1_scaffold_595_23
unknown

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comp(23399..23830)
DNA (432bp) protein (144aa)

This feature has no annotations

L3_106_000M1_scaffold_595_24
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23790..24506)
DNA (717bp) protein (239aa)
ketose-bisphosphate aldolase (EC:4.1.2.40)
Ketose-bisphosphate aldolase n=2 Tax=Clostridiales RepID=A5ZM34_9FIRM
Ketose-bisphosphate aldolase {ECO:0000313|EMBL:EDM88928.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_106_000M1_scaffold_595_25
Gilliamella apicola, Gilliamella, Orbales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24689..25441
DNA (753bp) protein (251aa)
alkaline phosphatase n=1 Tax=Lactobacillus zeae RepID=UPI0002492807
Transcriptional regulator of sugar metabolism {ECO:0000313|EMBL:KES16110.1}; TaxID=1445512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Orbales; Orbaceae; Gilliamella.;" source="Gilliamella apicola SCGC AB-598-P17.;"
putative transcriptional regulator
L3_106_000M1_scaffold_595_26
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(25454..26287)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ENX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB02303.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
cation/cationic drug transporter
L3_106_000M1_scaffold_595_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26306..27730)
DNA (1425bp) protein (475aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XH42_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45681.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_595_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27812..29362)
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XH41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45680.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Na+/H+ antiporter NhaC
L3_106_000M1_scaffold_595_29
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29594..30391)
DNA (798bp) protein (266aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=2 Tax=Clostridiales RepID=B0NBT8_CLOSV
L3_106_000M1_scaffold_595_30
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30517..31767)
DNA (1251bp) protein (417aa)
abgB2; p-aminobenzoyl-glutamate hydrolase subunit B (EC:3.5.1.-)
Amidohydrolase n=1 Tax=Dorea longicatena CAG:42 RepID=R7FZ30_9FIRM
Amidohydrolase {ECO:0000313|EMBL:CDE20494.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Displaying items 1-30 of 69 in total

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