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L3_106_000M1_scaffold_617

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Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_617_1
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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23..1210
DNA (1188bp) protein (396aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF52819.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_106_000M1_scaffold_617_2
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1787..2053
DNA (267bp) protein (89aa)
Uncharacterized protein n=4 Tax=Clostridium bolteae RepID=R0B4A2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ47373.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L3_106_000M1_scaffold_617_3
Sutterella parvirubra, Sutterella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2152..4323
DNA (2172bp) protein (724aa)
N-6 DNA Methylase n=1 Tax=Sutterella parvirubra YIT 11816 RepID=H3KCK3_9BURK
N-6 DNA Methylase {ECO:0000313|EMBL:EHY32149.1}; TaxID=762967 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella.;" source="Sutterella parvirubra YIT 11816.;"
N-6 DNA Methylase
L3_106_000M1_scaffold_617_4
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4310..4861)
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GIU9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF08703.1}; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
L3_106_000M1_scaffold_617_5
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4854..5084)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=R0B5C8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ43903.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
XRE family transcriptional regulator
L3_106_000M1_scaffold_617_6
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5180..5992
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CQA2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI71437.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
L3_106_000M1_scaffold_617_7
Clostridium sp. CAG:632, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6417..6674)
DNA (258bp) protein (86aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1262830 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:632.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium sp. CAG:632 RepID=R5KAP8_9CLOT
L3_106_000M1_scaffold_617_8
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6679..7110)
DNA (432bp) protein (144aa)
Fe-S iron-sulfur cluster assembly protein NifU family n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ETB0_9FIRM
Fe-S iron-sulfur cluster assembly protein NifU family {ECO:0000313|EMBL:CDE05860.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_106_000M1_scaffold_617_9
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(7122..8312)
DNA (1191bp) protein (397aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LKD6_9FIRM
L3_106_000M1_scaffold_617_10
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

Not on your lists

comp(8309..9262)
DNA (954bp) protein (318aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5CWH4_9FIRM
L3_106_000M1_scaffold_617_11
Anaerovibrio lipolyticus, Anaerovibrio, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(9265..10554)
DNA (1290bp) protein (430aa)
O-acetylhomoserine aminocarboxypropyltransferase {ECO:0000313|EMBL:KHM52806.1}; EC=2.5.1.49 {ECO:0000313|EMBL:KHM52806.1};; TaxID=82374 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Anaerovibrio.;" source="Anaerovibrio lipolyticus.;"
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine sulfhydrolase n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K847_9FIRM
L3_106_000M1_scaffold_617_12
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11182..12648
DNA (1467bp) protein (489aa)
Chorismate binding enzyme n=1 Tax=Clostridium leptum CAG:27 RepID=R6P3T3_9CLOT
Chorismate binding enzyme {ECO:0000313|EMBL:CDC04632.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
anthranilate/para-aminobenzoate synthase component I, TrpE
L3_106_000M1_scaffold_617_13
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12645..13214
DNA (570bp) protein (190aa)
Glutamine amidotransferase, class I n=1 Tax=Clostridium leptum DSM 753 RepID=A7VSX2_9CLOT
Glutamine amidotransferase, class I {ECO:0000313|EMBL:EDO61268.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
anthranilate/para-aminobenzoate synthase component II, TrpG
L3_106_000M1_scaffold_617_14
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13218..14249
DNA (1032bp) protein (344aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2A6X2_9FIRM
L3_106_000M1_scaffold_617_15
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14246..15028
DNA (783bp) protein (261aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VSX0_9CLOT
L3_106_000M1_scaffold_617_16
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15025..15633
DNA (609bp) protein (203aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
trpF; N-(5'-phosphoribosyl)anthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MF66_9FIRM
L3_106_000M1_scaffold_617_17
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15630..16820
DNA (1191bp) protein (397aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
trpB; tryptophan synthase beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Clostridium leptum DSM 753 RepID=A7VSW8_9CLOT
L3_106_000M1_scaffold_617_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16813..17583
DNA (771bp) protein (257aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tryptophan synthase, alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSJ9_9CLOT
L3_106_000M1_scaffold_617_19
Roseburia sp. CAG:471, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17716..19431)
DNA (1716bp) protein (572aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:471 RepID=R7E9L8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD99026.1}; TaxID=1262948 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:471.;"
hypothetical protein
L3_106_000M1_scaffold_617_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19446..20141)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47005.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_617_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20134..20847)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47006.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
VTC domain-containing protein
L3_106_000M1_scaffold_617_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21021..21692
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XH03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45642.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_106_000M1_scaffold_617_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21689..22936
DNA (1248bp) protein (416aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XH04_9FIRM
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_106_000M1_scaffold_617_24
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23126..24043
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M567_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63012.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
Mg2 transporter protein CorA family protein
L3_106_000M1_scaffold_617_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24715..25959)
DNA (1245bp) protein (415aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative two-component histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YSW8_9FIRM
L3_106_000M1_scaffold_617_26
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(25953..26630)
DNA (678bp) protein (226aa)
transcriptional regulator n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B5C999
Uncharacterized protein {ECO:0000313|EMBL:CCX91504.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
OmpR family two-component response regulator
L3_106_000M1_scaffold_617_27
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26830..28560
DNA (1731bp) protein (577aa)
Putative drug efflux protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KRI1_OSCVS
putative drug efflux protein
Putative drug efflux protein {ECO:0000313|EMBL:BAK97451.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_106_000M1_scaffold_617_28
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28557..29291
DNA (735bp) protein (245aa)
ABC transporter, ATP-binding protein n=2 Tax=Oscillibacter RepID=U2QSN7_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK59239.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_106_000M1_scaffold_617_29
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29288..30484
DNA (1197bp) protein (399aa)
Efflux ABC transporter, permease protein n=2 Tax=Oscillibacter RepID=U2RUR0_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:ERK59238.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative drug efflux ABC transporter permease protein
L3_106_000M1_scaffold_617_30
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30502..32343
DNA (1842bp) protein (614aa)
Putative surface layer protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KRI4_OSCVS
putative surface layer protein
Putative surface layer protein {ECO:0000313|EMBL:BAK97454.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Displaying items 1-30 of 71 in total

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