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L3_106_000M1_scaffold_646

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_646_1
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..99)
DNA (99bp) protein (33aa)
Bacterial flagellin n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55115.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
fliC; flagellin
L3_106_000M1_scaffold_646_2
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(169..423)
DNA (255bp) protein (85aa)
Carbon storage regulator n=1 Tax=Clostridium sp. ASF356 RepID=N1ZJD9_9CLOT
Carbon storage regulator {ECO:0000313|EMBL:EMZ13890.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
L3_106_000M1_scaffold_646_3
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(604..1239)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A5L9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ21738.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_106_000M1_scaffold_646_4
unknown

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comp(1731..1973)
DNA (243bp) protein (81aa)

This feature has no annotations

L3_106_000M1_scaffold_646_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2000..3262)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46993.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glycosyl transferase family protein
L3_106_000M1_scaffold_646_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3584..4696
DNA (1113bp) protein (371aa)
putative osmoprotectant ABC transporter ATP-binding protein (EC:3.6.3.32)
Osmoprotectant transport system ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU6_9FIRM
Osmoprotectant transport system ATP-binding protein {ECO:0000313|EMBL:EGJ46992.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_646_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4724..5329
DNA (606bp) protein (202aa)
Osmoprotectant transport system permease n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU5_9FIRM
Osmoprotectant transport system permease {ECO:0000313|EMBL:EGJ46991.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative osmoprotectant ABC transporter permease protein
L3_106_000M1_scaffold_646_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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5326..6861
DNA (1536bp) protein (512aa)
Osmoprotectant transport system permease n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU4_9FIRM
Osmoprotectant transport system permease {ECO:0000313|EMBL:EGJ46990.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative osmoprotectant ABC transporter permease/osmoprotectant-binding protein
L3_106_000M1_scaffold_646_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6996..7919)
DNA (924bp) protein (308aa)
Elongation factor Ts n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDL1_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
tsf; elongation factor Ts
L3_106_000M1_scaffold_646_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8013..8747)
DNA (735bp) protein (245aa)
30S ribosomal protein S2 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDL2_9FIRM
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpsB; 30S ribosomal protein S2
L3_106_000M1_scaffold_646_11
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9309..13994
DNA (4686bp) protein (1562aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CA67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO34336.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
S-layer domain-containing protein
L3_106_000M1_scaffold_646_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14075..14341)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDL3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46909.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_646_13
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14482..15282)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036748E4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO35488.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_106_000M1_scaffold_646_14
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15276..15983)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:37 RepID=R7JRR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE66248.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
ABC-type multidrug transport system, ATPase component
L3_106_000M1_scaffold_646_15
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15980..16351)
DNA (372bp) protein (124aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium sp. KLE 1755 RepID=U2C991_9CLOT
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ERI65812.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L3_106_000M1_scaffold_646_16
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16634..17962
DNA (1329bp) protein (443aa)
Acetyl-CoA hydrolase/transferase n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9STE4_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF06787.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Acetyl-CoA hydrolase
L3_106_000M1_scaffold_646_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18218..18925)
DNA (708bp) protein (236aa)
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47831.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_106_000M1_scaffold_646_18
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

19068..19640
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YAD1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13368.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Predicted transcriptional regulators
L3_106_000M1_scaffold_646_19
unknown

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19637..20071
DNA (435bp) protein (145aa)

This feature has no annotations

L3_106_000M1_scaffold_646_20
unknown

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20103..20333
DNA (231bp) protein (77aa)

This feature has no annotations

L3_106_000M1_scaffold_646_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20314..21174)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAI9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47367.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_106_000M1_scaffold_646_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21616..22941
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47773.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative surface layer protein
L3_106_000M1_scaffold_646_23
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23129..24511)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KQW1_OSCVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK99784.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_106_000M1_scaffold_646_24
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24504..24842)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LYY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63551.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
putative PadR family transcriptional regulator
L3_106_000M1_scaffold_646_25
unknown

Not on your lists

comp(24914..25564)
DNA (651bp) protein (217aa)

This feature has no annotations

L3_106_000M1_scaffold_646_26
unknown

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comp(25589..27034)
DNA (1446bp) protein (482aa)

This feature has no annotations

L3_106_000M1_scaffold_646_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27122..28954)
DNA (1833bp) protein (611aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glmS; glucosamine-6-phosphate synthase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDR2_9FIRM
L3_106_000M1_scaffold_646_28
Alistipes sp. 627, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29292..29819)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:157 RepID=R5WT49_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KHE41895.1}; TaxID=1501391 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. 627.;"
hypothetical protein
L3_106_000M1_scaffold_646_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29822..30388)
DNA (567bp) protein (189aa)
Maltose O-acetyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDR1_9FIRM
Maltose O-acetyltransferase {ECO:0000313|EMBL:EGJ46957.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
lacA; galactose-6-phosphate isomerase LacA subunit
L3_106_000M1_scaffold_646_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30594..32702)
DNA (2109bp) protein (703aa)
Glutamine synthetase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDQ8_9FIRM
Glutamine synthetase {ECO:0000313|EMBL:EGJ46954.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glutamine synthetase catalytic region
Displaying items 1-30 of 67 in total

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