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L3_106_000M1_scaffold_1243

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1243_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2..253
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZTN8_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDN86898.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_106_000M1_scaffold_1243_2
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


391..543
DNA (153bp) protein (51aa)
50S ribosomal protein L34 n=18 Tax=Bacteroidales RepID=A7AE63_9PORP
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
50S ribosomal protein L34
L3_106_000M1_scaffold_1243_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

664..1296
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B3D1_9PORP
PASTA domain protein {ECO:0000313|EMBL:CDD11267.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_1243_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1299..2378
DNA (1080bp) protein (360aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Pseudouridine synthase n=3 Tax=Parabacteroides RepID=A7AE65_9PORP
ribosomal large subunit pseudouridine synthase D
L3_106_000M1_scaffold_1243_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2382..3359
DNA (978bp) protein (326aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ddl; D-alanyl-alanine synthetase A (EC:6.3.2.4)
D-alanine--D-alanine ligase n=2 Tax=Parabacteroides RepID=K6BQA6_9PORP
L3_106_000M1_scaffold_1243_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3449..4606
DNA (1158bp) protein (386aa)
Acyltransferase n=3 Tax=Parabacteroides RepID=A7AE67_9PORP
Acyltransferase {ECO:0000313|EMBL:CDD11264.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_1243_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4715..8683)
DNA (3969bp) protein (1323aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B2M5_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:EDN86905.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
two-component system sensor histidine kinase/response regulator
L3_106_000M1_scaffold_1243_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8906..10138
DNA (1233bp) protein (411aa)
Nucleoside transporter n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AE70_9PORP
Nucleoside transporter {ECO:0000313|EMBL:EDN86907.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
major facilitator transporter
L3_106_000M1_scaffold_1243_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10670..11878
DNA (1209bp) protein (403aa)
Ornithine aminotransferase n=3 Tax=Parabacteroides RepID=A7AE71_9PORP
Ornithine aminotransferase {ECO:0000313|EMBL:EDN86908.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
acetylornithine aminotransferase
L3_106_000M1_scaffold_1243_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11885..12781
DNA (897bp) protein (299aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Arginase n=2 Tax=Parabacteroides merdae RepID=A7AE72_9PORP
arginase
L3_106_000M1_scaffold_1243_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12888..15191)
DNA (2304bp) protein (768aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZTM8_9PORP
Outer membrane protein OMP85 family {ECO:0000313|EMBL:CDD11256.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_1243_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15188..19816)
DNA (4629bp) protein (1543aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Y6Y3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08947.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_106_000M1_scaffold_1243_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19991..20779
DNA (789bp) protein (263aa)
Inositol monophosphatase family protein n=3 Tax=Parabacteroides merdae RepID=A7AE76_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08948.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
inositol-1-monophosphatase
L3_106_000M1_scaffold_1243_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21184..22722)
DNA (1539bp) protein (513aa)
Bacterial group 2 Ig-like protein n=2 Tax=Parabacteroides merdae RepID=A7AE79_9PORP
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:EDN86916.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative lipoprotein
L3_106_000M1_scaffold_1243_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22749..25490)
DNA (2742bp) protein (914aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZTM4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08951.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
TonB-dependent receptor
L3_106_000M1_scaffold_1243_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25564..25941
DNA (378bp) protein (126aa)
Thioesterase family protein n=4 Tax=Parabacteroides RepID=A7AE80_9PORP
Thioesterase family protein {ECO:0000313|EMBL:CDD13759.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Thioesterase superfamily
L3_106_000M1_scaffold_1243_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26520..26651)
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z0D1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08954.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_106_000M1_scaffold_1243_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26848..29283
DNA (2436bp) protein (812aa)
TonB-dependent receptor n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y5Q3_9PORP
TonB-dependent receptor {ECO:0000313|EMBL:CDD13757.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent receptor
L3_106_000M1_scaffold_1243_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29510..30715
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZTL9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08956.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_106_000M1_scaffold_1243_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30813..34172
DNA (3360bp) protein (1120aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Parabacteroides RepID=A7A9F4_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD13755.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Outer membrane receptor proteins, mostly Fe transport
L3_106_000M1_scaffold_1243_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34202..36160
DNA (1959bp) protein (653aa)
SusD family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X3P1_9PORP
SusD family protein {ECO:0000313|EMBL:CDD13754.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ragB/SusD family protein
L3_106_000M1_scaffold_1243_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36220..36756)
DNA (537bp) protein (179aa)
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Parabacteroides RepID=K6AQN2_9PORP
Sigma-70 region 2 {ECO:0000313|EMBL:CDD13753.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative RNA polymerase ECF-type sigma factor
L3_106_000M1_scaffold_1243_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

37565..38653
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BQ88_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13868.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_106_000M1_scaffold_1243_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

39137..40654
DNA (1518bp) protein (506aa)
acetyl-CoA carboxylase (EC:6.4.1.2)
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y607_9PORP
Acetyl-CoA carboxylase biotin carboxylase subunit {ECO:0000313|EMBL:CDD13867.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_106_000M1_scaffold_1243_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40668..41207
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5Y6Z6_9PORP
Biotin-requiring enzyme {ECO:0000313|EMBL:CDD13866.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
biotin/lipoyl attachment domain-containing protein
L3_106_000M1_scaffold_1243_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

41185..42717
DNA (1533bp) protein (511aa)
propionyl-CoA carboxylase (EC:6.4.1.3)
Carboxyl transferase domain protein n=2 Tax=Parabacteroides RepID=A7A9G3_9PORP
Carboxyl transferase domain protein {ECO:0000313|EMBL:CDD13865.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_106_000M1_scaffold_1243_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

42872..44221
DNA (1350bp) protein (450aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7A9G4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08964.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_106_000M1_scaffold_1243_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44260..44760)
DNA (501bp) protein (167aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ribonucleoside-triphosphate reductase class III activase subunit (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=4 Tax=Parabacteroides RepID=A7A9G5_9PORP
L3_106_000M1_scaffold_1243_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44865..47072)
DNA (2208bp) protein (736aa)
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y600_9PORP
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDD13862.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_106_000M1_scaffold_1243_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(47837..48694)
DNA (858bp) protein (286aa)
ATP synthase gamma chain n=2 Tax=Parabacteroides merdae RepID=A7A9G7_9PORP
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
F0F1 ATP synthase subunit gamma
Displaying items 1-30 of 52 in total

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