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L3_106_000M1_scaffold_5200

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_5200_1
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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138..1307
DNA (1170bp) protein (390aa)
Uncharacterized protein n=7 Tax=Bacteroides RepID=C6Z345_9BACE
phosphoribosylformylglycinamidine cyclo-ligase
Putative phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000313|EMBL:CDF18955.1}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
L3_106_000M1_scaffold_5200_2
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1550..2665
DNA (1116bp) protein (372aa)
Peptide chain release factor 1 n=7 Tax=Bacteroides RepID=A6KWL0_BACV8
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=702446 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus PC510.;"
L3_106_000M1_scaffold_5200_3
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2702..3520
DNA (819bp) protein (273aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
Orotidine 5'-phosphate decarboxylase n=15 Tax=Bacteroides RepID=PYRF_BACV8
orotidine 5'-phosphate decarboxylase
L3_106_000M1_scaffold_5200_4
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3609..4844
DNA (1236bp) protein (412aa)
Phosphohydrolase n=1 Tax=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) RepID=A6KWL2_BACV8
phosphohydrolase
Phosphohydrolase {ECO:0000313|EMBL:KDS54640.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
L3_106_000M1_scaffold_5200_5
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4977..6017
DNA (1041bp) protein (347aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
UDP-3-O-acylglucosamine N-acyltransferase n=6 Tax=Bacteroides RepID=LPXD_BACV8
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
L3_106_000M1_scaffold_5200_6
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6023..7408
DNA (1386bp) protein (462aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|SAAS:SAAS00064869}; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00041386};; EC=4.2.1.59 {ECO:0000256|SAAS:SAAS00064862};; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000256|SAAS:SAAS00041388}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabZ n=6 Tax=root RepID=C6Z351_9BACE
bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase
L3_106_000M1_scaffold_5200_7
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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7425..8192
DNA (768bp) protein (256aa)
UDP-N-acetylglucosamine acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=7 Tax=Bacteroides RepID=A6KWL5_BACV8
L3_106_000M1_scaffold_5200_8
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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8255..8818
DNA (564bp) protein (188aa)
Uncharacterized protein n=7 Tax=Bacteroides RepID=A6KWL6_BACV8
hypothetical protein
Plasmid pRiA4b ORF-3-like family protein {ECO:0000313|EMBL:KDS54644.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
L3_106_000M1_scaffold_5200_9
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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8870..9772
DNA (903bp) protein (301aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase 1 {ECO:0000255|HAMAP-Rule:MF_00185}; EC=2.5.1.75 {ECO:0000255|HAMAP-Rule:MF_00185};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase 1 {ECO:0000255|HAMAP-Rule:MF_00185}; Short=DMAPP:tRNA dimethylallyltransferase 1 {ECO:0000255|HAMAP-Rule:MF_00185};; Short=DMATase 1 {ECO:0000255|HAMAP-Rule:MF_00185};; Isopentenyl-diphosphate:tRNA isopentenyltransferase 1 {ECO:0000255|HAMAP-Rule:MF_00185}; Short=IPP transferase 1 {ECO:0000255|HAMAP-Rule:MF_00185};; Short=IPPT 1 {ECO:0000255|HAMAP-Rule:MF_00185};; Short=IPTase 1 {ECO:0000255|HAMAP-Rule:MF_00185};; TaxID=435590 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154).;"
tRNA dimethylallyltransferase 1 n=3 Tax=Bacteroides vulgatus RepID=MIAA1_BACV8
L3_106_000M1_scaffold_5200_10
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9781..11889
DNA (2109bp) protein (703aa)
Glycoside hydrolase family 29, candidate alpha-L-fucosidase n=2 Tax=Bacteroides vulgatus RepID=A6KWL8_BACV8
alpha-L-fucosidase
Glycoside hydrolase family 29, candidate alpha-L-fucosidase {ECO:0000313|EMBL:ABR37832.1}; TaxID=435590 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154).;"
L3_106_000M1_scaffold_5200_11
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(11777..12286)
DNA (510bp) protein (170aa)
Uncharacterized protein n=2 Tax=Bacteroides vulgatus RepID=A6KWL9_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDS26417.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
L3_106_000M1_scaffold_5200_12
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(12541..14319)
DNA (1779bp) protein (593aa)
Alpha-1,3-galactosidase B n=2 Tax=Bacteroides vulgatus RepID=GLAB1_BACV8
ATP/GTP-binding site
Putative alpha-1,3-galactosidase B {ECO:0000313|EMBL:EFG17753.1}; TaxID=702446 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus PC510.;"
Displaying 12 items

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