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L3_106_000M1_scaffold_884

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_884_1
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(215..1645)
DNA (1431bp) protein (477aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6E6C3_9FIRM
L3_106_000M1_scaffold_884_2
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1691..3136)
DNA (1446bp) protein (482aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXA6_9CLOT
L3_106_000M1_scaffold_884_3
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3217..3924)
DNA (708bp) protein (236aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Clostridium sp. CAG:352 RepID=R6R341_9CLOT
L3_106_000M1_scaffold_884_4
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4033..5244)
DNA (1212bp) protein (404aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
LL-diaminopimelate aminotransferase n=1 Tax=Eubacterium sp. CAG:251 RepID=R6Q9U1_9FIRM
L,L-diaminopimelate aminotransferase
L3_106_000M1_scaffold_884_5
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5336..6208)
DNA (873bp) protein (291aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
diaminopimelate epimerase (EC:5.1.1.7)
diaminopimelate epimerase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037517BB
L3_106_000M1_scaffold_884_6
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6205..6768)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N2G8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY91781.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
response regulator receiver/ANTAR domain-containing protein
L3_106_000M1_scaffold_884_7
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7436..8524
DNA (1089bp) protein (363aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
carbamoyl-phosphate synthase, small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MZD2_9FIRM
L3_106_000M1_scaffold_884_8
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8521..11730
DNA (3210bp) protein (1070aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Carbamoyl-phosphate synthase large chain n=3 Tax=root RepID=R5MG62_9FIRM
carB; carbamoyl phosphate synthase large subunit
L3_106_000M1_scaffold_884_9
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11843..12805)
DNA (963bp) protein (321aa)
sdhA; L-serine dehydratase alpha chain (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, alpha subunit n=1 Tax=Clostridium sp. ASF356 RepID=N1ZJ74_9CLOT
L-serine dehydratase, iron-sulfur-dependent, alpha subunit {ECO:0000313|EMBL:EMZ13840.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
L3_106_000M1_scaffold_884_10
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12820..13488)
DNA (669bp) protein (223aa)
sdhB; L-serine dehydratase iron-sulfur-dependent beta subunit SdhB (EC:4.3.1.17)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:253 RepID=R6MZ16_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB91027.1}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
L3_106_000M1_scaffold_884_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13551..13820)
DNA (270bp) protein (90aa)
Smr protein/MutS2 n=1 Tax=Clostridium sporosphaeroides RepID=UPI000360B3FD
Smr domain protein {ECO:0000313|EMBL:EJF41587.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Smr protein/MutS2
L3_106_000M1_scaffold_884_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13898..15349)
DNA (1452bp) protein (484aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HTY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41338.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Predicted Fe-S oxidoreductases
L3_106_000M1_scaffold_884_13
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15469..16719)
DNA (1251bp) protein (417aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=696281 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
ATP-binding region ATPase domain protein n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DR23_DESRL
ATP-binding protein
L3_106_000M1_scaffold_884_14
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16712..17392)
DNA (681bp) protein (227aa)
Response regulator (CheY-like receiver and winged helix DNA-binding domain containing protein) n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U583_9CLOT
Response regulator (CheY-like receiver and winged helix DNA-binding domain containing protein) {ECO:0000313|EMBL:EKQ56736.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
dltR; transcriptional regulatory protein DltR
L3_106_000M1_scaffold_884_15
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17588..18349
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H243_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97210.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
VTC domain-containing protein
L3_106_000M1_scaffold_884_16
Desulfosporosinus sp. HMP52, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18384..19067
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C829_9CLOT
Cell division protein FtsZ {ECO:0000313|EMBL:KGK91171.1}; TaxID=1487923 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. HMP52.;"
hypothetical protein
L3_106_000M1_scaffold_884_17
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19387..20223
DNA (837bp) protein (279aa)
putative acetyl esterase (EC:3.1.1.-)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PME9_9FIRM
Phospholipase/Carboxylesterase family protein {ECO:0000313|EMBL:KFN11207.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
L3_106_000M1_scaffold_884_18
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20415..21884)
DNA (1470bp) protein (490aa)
Alpha-L-fucosidase (EC:3.2.1.51)
Alpha-L-fucosidase Fuc29A n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MST6_9FIRM
Alpha-L-fucosidase Fuc29A {ECO:0000313|EMBL:CCY92794.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
L3_106_000M1_scaffold_884_19
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22052..24805)
DNA (2754bp) protein (918aa)
Bacterial membrane protein YfhO n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LEG8_9FIRM
Bacterial membrane protein YfhO {ECO:0000313|EMBL:EET60951.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Predicted membrane protein
L3_106_000M1_scaffold_884_20
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(24840..27476)
DNA (2637bp) protein (879aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G7L2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW05996.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
ggaB; poly(glucosyl N-acetylgalactosamine 1-phosphate) glucosyltransferase
L3_106_000M1_scaffold_884_21
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27758..28222)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DXZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA89151.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
L3_106_000M1_scaffold_884_22
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28236..28802)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:557 RepID=R6HEN2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB24512.1}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
L3_106_000M1_scaffold_884_23
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28816..29889)
DNA (1074bp) protein (358aa)
Baseplate J-like protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYJ7_9CLOT
Baseplate J-like protein {ECO:0000313|EMBL:EDO59625.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
baseplate J-like family protein
L3_106_000M1_scaffold_884_24
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29882..30253)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:557 RepID=R6GJB8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB24510.1}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
L3_106_000M1_scaffold_884_25
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30250..30630)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000376B3ED
Uncharacterized protein {ECO:0000313|EMBL:EJF40372.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_106_000M1_scaffold_884_26
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30648..31601)
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N5C5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06260.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L3_106_000M1_scaffold_884_27
unknown

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comp(31598..32104)
DNA (507bp) protein (169aa)
LysM domain protein n=1 Tax=Clostridium sp. CAG:557 RepID=R6GTF3_9CLOT
L3_106_000M1_scaffold_884_28
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32272..32652)
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VYJ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06254.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L3_106_000M1_scaffold_884_29
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32649..33104)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NPZ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC10434.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_106_000M1_scaffold_884_30
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33101..33448)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IVY7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42152.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Displaying items 1-30 of 55 in total

View Taxonomy