ggKbase home page

L3_106_000M1_scaffold_980

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_980_1
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

130..1119
DNA (990bp) protein (330aa)
Tyrosine recombinase XerC 1 n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N4T4_9FIRM
Tyrosine recombinase XerC 1 {ECO:0000313|EMBL:CCY92576.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
integrase family protein
L3_106_000M1_scaffold_980_2
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1110..1757)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IWN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42392.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_106_000M1_scaffold_980_3
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1872..3257)
DNA (1386bp) protein (462aa)
conserved hypothetical protein (EC:2.1.1.-)
SCIFF radical SAM maturase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7I7_9FIRM
SCIFF radical SAM maturase {ECO:0000313|EMBL:CDB42454.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_106_000M1_scaffold_980_4
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3914..5002
DNA (1089bp) protein (363aa)
KamA family protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YR38_9CLOT
KamA family protein {ECO:0000313|EMBL:ENZ14503.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
L-lysine 2,3-aminomutase
L3_106_000M1_scaffold_980_5
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5095..8232)
DNA (3138bp) protein (1046aa)
Isoleucine--tRNA ligase {ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|SAAS:SAAS00106059};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Isoleucyl-tRNA synthetase n=2 Tax=root RepID=R5MFR6_9FIRM
isoleucyl-tRNA synthetase
L3_106_000M1_scaffold_980_6
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8413..10014
DNA (1602bp) protein (534aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter n=1 Tax=Clostridium sp. CAG:678 RepID=R5KQZ0_9CLOT
Sugar (Glycoside-Pentoside-Hexuronide) transporter {ECO:0000313|EMBL:CCY69230.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
sugar (glycoside-pentoside-hexuronide) transporter
L3_106_000M1_scaffold_980_7
unknown

Not on your lists

10244..12685
DNA (2442bp) protein (814aa)

This feature has no annotations

L3_106_000M1_scaffold_980_8
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(12806..13159)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LYR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87286.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
Arsenate reductase and related proteins, glutaredoxin family
L3_106_000M1_scaffold_980_9
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13156..13380)
DNA (225bp) protein (75aa)
Alpha amylase, catalytic domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAI6_9CLOT
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EEG31531.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_106_000M1_scaffold_980_10
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13394..14038)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GK39_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO36334.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_106_000M1_scaffold_980_11
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14159..14788)
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
upp; Uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MZX9_9FIRM
L3_106_000M1_scaffold_980_12
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15017..16924)
DNA (1908bp) protein (636aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67471.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
alpha amylase
L3_106_000M1_scaffold_980_13
unknown

Not on your lists

comp(17043..17309)
DNA (267bp) protein (89aa)

This feature has no annotations

L3_106_000M1_scaffold_980_14
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17629..19200
DNA (1572bp) protein (524aa)
MATE domain protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XY42_9FIRM
MATE domain protein {ECO:0000313|EMBL:CDA19495.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
polysaccharide biosynthesis protein
L3_106_000M1_scaffold_980_15
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19226..20356)
DNA (1131bp) protein (377aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IW66_9FIRM
L3_106_000M1_scaffold_980_16
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20392..21495)
DNA (1104bp) protein (368aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC:2.4.99.17)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y1X3_9FIRM
L3_106_000M1_scaffold_980_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22011..23090
DNA (1080bp) protein (360aa)
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate semialdehyde dehydrogenase {ECO:0000313|EMBL:CBK96171.1}; EC=1.2.1.11 {ECO:0000313|EMBL:CBK96171.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Aspartate semialdehyde dehydrogenase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSV2_9FIRM
L3_106_000M1_scaffold_980_18
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23128..24021
DNA (894bp) protein (298aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Clostridium sp. CAG:413 RepID=R6PH63_9CLOT
dihydrodipicolinate synthase
L3_106_000M1_scaffold_980_19
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24073..24831
DNA (759bp) protein (253aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
dapB; 4-hydroxy-tetrahydrodipicolinate reductase (EC:1.17.1.-)
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=root RepID=R5N4U9_9FIRM
L3_106_000M1_scaffold_980_20
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24847..25308
DNA (462bp) protein (154aa)
Aspartate kinase n=2 Tax=root RepID=K1RPB8_9ZZZZ
Amino acid-binding ACT domain protein {ECO:0000313|EMBL:CCY92598.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
amino acid-binding ACT protein
L3_106_000M1_scaffold_980_21
unknown

Not on your lists

26104..26478
DNA (375bp) protein (125aa)

This feature has no annotations

L3_106_000M1_scaffold_980_22
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26870..28063
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YSX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA19717.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
hypothetical protein
L3_106_000M1_scaffold_980_23
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28118..29386)
DNA (1269bp) protein (423aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
enolase (EC:4.2.1.11)
Enolase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYE5_9FIRM
L3_106_000M1_scaffold_980_24
unknown

Not on your lists

comp(29776..29883)
DNA (108bp) protein (36aa)
L-1 2-propanediol oxidoreductase n=1 Tax=Acetobacter sp. CAG:977 RepID=R5Q1Q4_9PROT
L3_106_000M1_scaffold_980_25
unknown

Not on your lists

30198..31235
DNA (1038bp) protein (346aa)

This feature has no annotations

L3_106_000M1_scaffold_980_26
RBG_19FT_COMBO_Actinobacteria_36_27_curated, Actinobacteria, Bacteria

Not on your lists

31266..32390
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Bacillus isronensis B3W22 RepID=K1L2A3_9BACI
Predicted permease.
Tax=RBG_19FT_COMBO_Actinobacteria_36_27_curated
L3_106_000M1_scaffold_980_27
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32395..33057
DNA (663bp) protein (221aa)
lipoprotein-releasing system ATP-binding protein LolD (EC:3.6.3.-)
Uncharacterized protein n=3 Tax=Bacillus cereus group RepID=C3HE15_BACTU
Uncharacterized protein {ECO:0000313|EMBL:EJR25748.1}; TaxID=1053223 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus VD014.;"
L3_106_000M1_scaffold_980_28
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33298..33726)
DNA (429bp) protein (143aa)
ACT domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7C4_9FIRM
ACT domain protein {ECO:0000313|EMBL:CDB42394.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
ACT domain-containing protein
L3_106_000M1_scaffold_980_29
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33748..35052)
DNA (1305bp) protein (435aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
phenylacetate--CoA ligase (EC:6.2.1.30)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MLM0_9FIRM
L3_106_000M1_scaffold_980_30
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35075..35653)
DNA (579bp) protein (193aa)
iorB; indolepyruvate ferredoxin oxidoreductase beta subunit IorB (EC:1.2.7.8)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IAC6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42396.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Displaying items 1-30 of 45 in total

View Taxonomy