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L3_106_000M1_scaffold_1522

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_000M1_scaffold_1522_1
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(785..2347)
DNA (1563bp) protein (521aa)
Putative uncharacterized protein n=3 Tax=unclassified Lachnospiraceae RepID=E5XHL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV19175.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
nanC; neuraminidase
L3_106_000M1_scaffold_1522_2
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2539..3711)
DNA (1173bp) protein (391aa)
malate dehydrogenase (EC:1.1.1.38)
Malic enzyme NAD binding domain protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MF13_9FIRM
Malic enzyme NAD binding domain protein {ECO:0000313|EMBL:CCY90305.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
L3_106_000M1_scaffold_1522_3
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(3876..4985)
DNA (1110bp) protein (370aa)
Malate/L-lactate dehydrogenase n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K7R9_9FIRM
Malate/L-lactate dehydrogenase {ECO:0000313|EMBL:CDE72335.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
malate/L-lactate dehydrogenase
L3_106_000M1_scaffold_1522_4
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5063..6568)
DNA (1506bp) protein (502aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Glycerol kinase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IBC7_9FIRM
GlpK; glycerol kinase
L3_106_000M1_scaffold_1522_5
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6960..8669)
DNA (1710bp) protein (570aa)
LPXTG-motif protein cell wall anchor domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QMA9_9CLOT
LPXTG-motif protein cell wall anchor domain protein {ECO:0000313|EMBL:EKY28707.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
L3_106_000M1_scaffold_1522_6
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8914..10350
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MZV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY90876.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
hypothetical protein
L3_106_000M1_scaffold_1522_7
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10562..12064
DNA (1503bp) protein (501aa)
Sodium:galactoside symporter family protein n=2 Tax=root RepID=R5N4T6_9FIRM
Sodium:galactoside symporter family protein {ECO:0000313|EMBL:CCY92202.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
galactose permease
L3_106_000M1_scaffold_1522_8
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(12381..13946)
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NQI6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF94521.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
GDSL-like lipase/acylhydrolase domain-containing protein
L3_106_000M1_scaffold_1522_9
Bifidobacterium angulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(14605..17214)
DNA (2610bp) protein (870aa)
Uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FD00_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAQ97141.1}; TaxID=518635 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium angulatum DSM 20098 = JCM 7096.;"
L3_106_000M1_scaffold_1522_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17627..19960)
DNA (2334bp) protein (778aa)
Putative sortase SrtB family n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I3X7_9FIRM
Putative sortase SrtB family {ECO:0000313|EMBL:CDB41194.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
SpoIID/LytB domain-containing protein
L3_106_000M1_scaffold_1522_11
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20039..21766)
DNA (1728bp) protein (576aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HVZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41195.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
sortase
L3_106_000M1_scaffold_1522_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21811..22803)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HVZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41195.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_106_000M1_scaffold_1522_13
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22886..24130)
DNA (1245bp) protein (415aa)
Putative competence-damage inducible protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I709_9FIRM
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
competence/damage-inducible protein CinA
L3_106_000M1_scaffold_1522_14
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24173..25342)
DNA (1170bp) protein (390aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Probable tRNA sulfurtransferase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NW57_9CLOT
thiazole biosynthesis/tRNA modification protein ThiI
L3_106_000M1_scaffold_1522_15
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25379..26449)
DNA (1071bp) protein (357aa)
cysteine desulfurase (EC:2.8.1.7)
Aminotransferase class V n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HTK4_9FIRM
Aminotransferase class V {ECO:0000313|EMBL:CDB41198.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_106_000M1_scaffold_1522_16
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26756..27577
DNA (822bp) protein (274aa)
Amino acid ABC transporter substrate-binding protein PAAT family (TC 3.A.1.3.-) n=1 Tax=Clostridium sp. CAG:81 RepID=R5G4M0_9CLOT
Amino acid ABC transporter substrate-binding protein PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CCY12265.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L3_106_000M1_scaffold_1522_17
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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27715..28410
DNA (696bp) protein (232aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DKJ1_DESRL
polar amino acid ABC transporter inner membrane subunit
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:AEG59251.1}; TaxID=696281 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
L3_106_000M1_scaffold_1522_18
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

28423..29187
DNA (765bp) protein (255aa)
Amino acid ABC transporter ATP-binding protein PAAT family (TC 3.A.1.3.-) n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5A7N5_9FIRM
Amino acid ABC transporter ATP-binding protein PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CCX39240.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
ABC transporter-like protein
L3_106_000M1_scaffold_1522_19
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29318..30631
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MKM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71226.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
transporter, NhaC family (TC 2.A.35)
L3_106_000M1_scaffold_1522_20
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

31490..32116
DNA (627bp) protein (209aa)
VanZ family protein {ECO:0000313|EMBL:CEO89395.1}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
VanZ family protein id=3837666 bin=GWF2_Clostridiales_36_10 species=Clostridium hathewayi genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
VanZ family protein
L3_106_000M1_scaffold_1522_21
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32343..32654)
DNA (312bp) protein (104aa)
UPF0145 protein CBFG_05163 n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETV7_9FIRM
UPF0145 protein CBFG_05163 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L3_106_000M1_scaffold_1522_22
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

comp(32635..32859)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA08_9CLOT
hypothetical protein
Tax=GWF2_Clostridiales_38_85_curated
L3_106_000M1_scaffold_1522_23
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33262..34746)
DNA (1485bp) protein (495aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VV64_9CLOT
UPF0371 protein BN578_00448 {ECO:0000256|HAMAP-Rule:MF_01567}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_106_000M1_scaffold_1522_24
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34839..36167)
DNA (1329bp) protein (443aa)
GMP synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00008728}; EC=6.3.5.2 {ECO:0000256|SAAS:SAAS00008728};; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
GMP synthase n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GPX2_EUBLK
GMP synthase
L3_106_000M1_scaffold_1522_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(36237..37220)
DNA (984bp) protein (328aa)
Diaminopimelate dehydrogenase {ECO:0000313|EMBL:EDN76972.1}; EC=1.4.1.16 {ECO:0000313|EMBL:EDN76972.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
diaminopimelate dehydrogenase (EC:1.4.1.16)
Diaminopimelate dehydrogenase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B4U9_RUMGN
L3_106_000M1_scaffold_1522_26
unknown

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37414..37551
DNA (138bp) protein (46aa)

This feature has no annotations

L3_106_000M1_scaffold_1522_27
unknown

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comp(37531..37737)
DNA (207bp) protein (69aa)

This feature has no annotations

L3_106_000M1_scaffold_1522_28
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(37916..38092)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0WXJ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF41041.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
Displaying 28 items

View Taxonomy